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L1_007_122G1_scaffold_48

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_48_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..1541)
DNA (1539bp) protein (513aa)
AMP-binding enzyme n=1 Tax=Varibaculum cambriense RepID=UPI0003B78F6C
Long-chain-fatty-acid-CoA ligase {ECO:0000313|EMBL:ETI83115.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
AMP-dependent synthetase and ligase
L1_007_122G1_scaffold_48_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1667..4501)
DNA (2835bp) protein (945aa)
excinuclease ABC subunit A n=1 Tax=Varibaculum cambriense RepID=UPI0003B500F7
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
excision endonuclease subunit A
L1_007_122G1_scaffold_48_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4549..5895)
DNA (1347bp) protein (449aa)
UPI0003D5A0DE related cluster n=1 Tax=unknown RepID=UPI0003D5A0DE
Uncharacterized protein {ECO:0000313|EMBL:ETI83108.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Hypothetical protein
L1_007_122G1_scaffold_48_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6113..6934
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B53C10
Uncharacterized protein {ECO:0000313|EMBL:ETI83107.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_48_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7163..8125
DNA (963bp) protein (321aa)
membrane protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B733AD
Uncharacterized protein {ECO:0000313|EMBL:ETI83106.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
membrane protein
L1_007_122G1_scaffold_48_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


8375..11062
DNA (2688bp) protein (896aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
valS; valine--tRNA ligase (EC:6.1.1.9)
valyl-tRNA synthetase n=1 Tax=Varibaculum cambriense RepID=UPI0003B429C3
L1_007_122G1_scaffold_48_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11109..12995
DNA (1887bp) protein (629aa)
UPI0003D60640 related cluster n=1 Tax=unknown RepID=UPI0003D60640
Uncharacterized protein {ECO:0000313|EMBL:ETI83104.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
AMP-dependent synthetase and ligase
L1_007_122G1_scaffold_48_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13048..13368)
DNA (321bp) protein (107aa)
chorismate mutase n=1 Tax=Varibaculum cambriense RepID=UPI0003B4536C
Chorismate mutase {ECO:0000313|EMBL:ETI83103.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
chorismate mutase
L1_007_122G1_scaffold_48_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13509..14750)
DNA (1242bp) protein (414aa)
UPI0003D5B620 related cluster n=1 Tax=unknown RepID=UPI0003D5B620
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP-dependent protease ATP-binding subunit
L1_007_122G1_scaffold_48_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14838..15503)
DNA (666bp) protein (222aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
endopeptidase Clp (EC:3.4.21.92)
UPI0003D5D947 related cluster n=1 Tax=unknown RepID=UPI0003D5D947
L1_007_122G1_scaffold_48_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15509..16126)
DNA (618bp) protein (206aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
endopeptidase Clp (EC:3.4.21.92)
UPI0003D69BBD related cluster n=1 Tax=unknown RepID=UPI0003D69BBD
L1_007_122G1_scaffold_48_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16377..17726)
DNA (1350bp) protein (450aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D641EE related cluster n=1 Tax=unknown RepID=UPI0003D641EE
trigger factor Tig
L1_007_122G1_scaffold_48_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17938..19251)
DNA (1314bp) protein (438aa)
UPI0003D62B25 related cluster n=1 Tax=unknown RepID=UPI0003D62B25
Uncharacterized protein {ECO:0000313|EMBL:ETI83098.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative lipoprotein
L1_007_122G1_scaffold_48_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19305..19553)
DNA (249bp) protein (83aa)
UPI0003D68516 related cluster n=1 Tax=unknown RepID=UPI0003D68516
Preprotein translocase subunit SecG {ECO:0000313|EMBL:ETI83097.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
protein translocase subunit secG
L1_007_122G1_scaffold_48_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19683..20456)
DNA (774bp) protein (258aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
UPI0003D664F2 related cluster n=1 Tax=unknown RepID=UPI0003D664F2
L1_007_122G1_scaffold_48_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20461..21657)
DNA (1197bp) protein (399aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3)
UPI0003D63A6D related cluster n=1 Tax=unknown RepID=UPI0003D63A6D
L1_007_122G1_scaffold_48_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21766..22773)
DNA (1008bp) protein (336aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
gapA2; Glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
UPI0003D5C0C3 related cluster n=1 Tax=unknown RepID=UPI0003D5C0C3
L1_007_122G1_scaffold_48_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22995..23972)
DNA (978bp) protein (326aa)
UPI0003D65D18 related cluster n=1 Tax=unknown RepID=UPI0003D65D18
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_48_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24033..25001)
DNA (969bp) protein (323aa)
UPI0003D5B928 related cluster n=1 Tax=unknown RepID=UPI0003D5B928
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_48_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25028..25981)
DNA (954bp) protein (318aa)
UPI0003D630DF related cluster n=1 Tax=unknown RepID=UPI0003D630DF
Nucleotide-binding protein Q618_VCMC00001G0672 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP-binding protein
L1_007_122G1_scaffold_48_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26011..27972)
DNA (1962bp) protein (654aa)
UPI0003D59F29 related cluster n=1 Tax=unknown RepID=UPI0003D59F29
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
excinuclease ABC subunit C
L1_007_122G1_scaffold_48_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28239..29576
DNA (1338bp) protein (446aa)
gdh; NADP-specific glutamate dehydrogenase Gdh (EC:1.4.1.4)
UPI0003D66BBF related cluster n=1 Tax=unknown RepID=UPI0003D66BBF
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_48_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29604..30335)
DNA (732bp) protein (244aa)
UPI0003D67169 related cluster n=1 Tax=unknown RepID=UPI0003D67169
Uncharacterized protein {ECO:0000313|EMBL:ETI83088.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_48_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30347..31168)
DNA (822bp) protein (274aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D66679 related cluster n=1 Tax=unknown RepID=UPI0003D66679
hypothetical protein
L1_007_122G1_scaffold_48_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31360..32844
DNA (1485bp) protein (495aa)
UPI0003D5ED39 related cluster n=1 Tax=unknown RepID=UPI0003D5ED39
Uncharacterized protein {ECO:0000313|EMBL:ETI83086.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_48_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32934..33974)
DNA (1041bp) protein (347aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
UPI0003D67CBD related cluster n=1 Tax=unknown RepID=UPI0003D67CBD
Uncharacterized protein {ECO:0000313|EMBL:ETI83085.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_48_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34285..35181
DNA (897bp) protein (299aa)
UPI0003D5A0F4 related cluster n=1 Tax=unknown RepID=UPI0003D5A0F4
Uncharacterized protein {ECO:0000313|EMBL:ETI83084.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
permease
L1_007_122G1_scaffold_48_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35239..36690)
DNA (1452bp) protein (484aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D60CD4 related cluster n=1 Tax=unknown RepID=UPI0003D60CD4
amidophosphoribosyltransferase
L1_007_122G1_scaffold_48_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36701..37894)
DNA (1194bp) protein (398aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
UPI0003D633DE related cluster n=1 Tax=unknown RepID=UPI0003D633DE
L1_007_122G1_scaffold_48_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37934..38917)
DNA (984bp) protein (328aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
UPI0003D6650A related cluster n=1 Tax=unknown RepID=UPI0003D6650A
Displaying items 1-30 of 133 in total

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