ggKbase home page

L1_007_122G1_scaffold_179

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_179_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

185..406
DNA (222bp) protein (74aa)
UPI0003D68CEA related cluster n=1 Tax=unknown RepID=UPI0003D68CEA
Uncharacterized protein {ECO:0000313|EMBL:ETI83703.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

524..787
DNA (264bp) protein (88aa)
UPI0003D608DE related cluster n=1 Tax=unknown RepID=UPI0003D608DE
Uncharacterized protein {ECO:0000313|EMBL:ETI83702.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1227..2642)
DNA (1416bp) protein (472aa)
UPI0003D64F91 related cluster n=1 Tax=unknown RepID=UPI0003D64F91
Uncharacterized protein {ECO:0000313|EMBL:ETI83701.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATPase
L1_007_122G1_scaffold_179_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2860..3243)
DNA (384bp) protein (128aa)
UPI0003D6418C related cluster n=1 Tax=unknown RepID=UPI0003D6418C
Uncharacterized protein {ECO:0000313|EMBL:ETI83700.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
monovalent cation/proton antiporter, MnhG/PhaG subunit
L1_007_122G1_scaffold_179_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3236..3586)
DNA (351bp) protein (117aa)
UPI0003D63B7D related cluster n=1 Tax=unknown RepID=UPI0003D63B7D
Uncharacterized protein {ECO:0000313|EMBL:ETI83699.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
multisubunit Na+/H+ antiporter subunit MnhF
L1_007_122G1_scaffold_179_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3592..4401)
DNA (810bp) protein (270aa)
UPI0003D640E7 related cluster n=1 Tax=unknown RepID=UPI0003D640E7
Uncharacterized protein {ECO:0000313|EMBL:ETI83698.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
multisubunit Na+/H+ antiporter MnhE subunit-like protein
L1_007_122G1_scaffold_179_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4394..6106)
DNA (1713bp) protein (571aa)
UPI0003D5B98F related cluster n=1 Tax=unknown RepID=UPI0003D5B98F
Uncharacterized protein {ECO:0000313|EMBL:ETI83697.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
NADH/Ubiquinone/plastoquinone (complex I)
L1_007_122G1_scaffold_179_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6103..6531)
DNA (429bp) protein (143aa)
UPI0003D64E9A related cluster n=1 Tax=unknown RepID=UPI0003D64E9A
Uncharacterized protein {ECO:0000313|EMBL:ETI83696.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
multisubunit Na+/H+ antiporter, MnhC subunit
L1_007_122G1_scaffold_179_9
Actinomyces europaeus, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6531..9614)
DNA (3084bp) protein (1028aa)
monovalent cation/H+ antiporter subunit A (EC:1.6.99.5)
cation:proton antiporter n=1 Tax=Varibaculum cambriense RepID=UPI0003B553A3
Uncharacterized protein {ECO:0000313|EMBL:EPD31180.1}; TaxID=883069 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces europaeus ACS-120-V-Col10b.;"
L1_007_122G1_scaffold_179_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9924..11090
DNA (1167bp) protein (389aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
UPI0003D60C0E related cluster n=1 Tax=unknown RepID=UPI0003D60C0E
L1_007_122G1_scaffold_179_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11120..12052
DNA (933bp) protein (311aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
UPI0003D5DE06 related cluster n=1 Tax=unknown RepID=UPI0003D5DE06
L1_007_122G1_scaffold_179_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12240..14585
DNA (2346bp) protein (782aa)
UPI0003D66A6E related cluster n=1 Tax=unknown RepID=UPI0003D66A6E
Uncharacterized protein {ECO:0000313|EMBL:ETI83691.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_179_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14720..16327
DNA (1608bp) protein (536aa)
purH; Bifunctional purine biosynthesis protein PurH (EC:2.1.2.3)
UPI0003D62896 related cluster n=1 Tax=unknown RepID=UPI0003D62896
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16511..18643
DNA (2133bp) protein (711aa)
UPI0003D5EDD6 related cluster n=1 Tax=unknown RepID=UPI0003D5EDD6
Uncharacterized protein {ECO:0000313|EMBL:ETI83689.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
proline iminopeptidase
L1_007_122G1_scaffold_179_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18640..20115)
DNA (1476bp) protein (492aa)
UPI0003D5B8F5 related cluster n=1 Tax=unknown RepID=UPI0003D5B8F5
Uncharacterized protein {ECO:0000313|EMBL:ETI83688.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ErfK/YbiS/YcfS/YnhG family protein
L1_007_122G1_scaffold_179_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


20438..20656
DNA (219bp) protein (73aa)
UPI0003D5F52D related cluster n=1 Tax=unknown RepID=UPI0003D5F52D
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpmE; 50S ribosomal protein L31
L1_007_122G1_scaffold_179_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20817..21866
DNA (1050bp) protein (350aa)
UPI0003D5E91F related cluster n=1 Tax=unknown RepID=UPI0003D5E91F
Uncharacterized protein {ECO:0000313|EMBL:ETI83686.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Oxidoreductase, zinc-binding dehydrogenase family protein
L1_007_122G1_scaffold_179_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21872..22822
DNA (951bp) protein (317aa)
UPI0003D66EF6 related cluster n=1 Tax=unknown RepID=UPI0003D66EF6
Transcriptional regulator, sugar-binding family protein {ECO:0000313|EMBL:ETI83685.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DeoR family transcripitonal regulator
L1_007_122G1_scaffold_179_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22825..23466
DNA (642bp) protein (214aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pmmB; phosphomannomutase (EC:5.4.2.8)
UPI0003D67E1A related cluster n=1 Tax=unknown RepID=UPI0003D67E1A
L1_007_122G1_scaffold_179_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23495..25027
DNA (1533bp) protein (511aa)
UPI0003D5B945 related cluster n=1 Tax=unknown RepID=UPI0003D5B945
Xylulose kinase {ECO:0000313|EMBL:ETI83683.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
sugar kinase
L1_007_122G1_scaffold_179_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25241..26341
DNA (1101bp) protein (367aa)
UPI0003D632DE related cluster n=1 Tax=unknown RepID=UPI0003D632DE
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptide subunit release factor RF1
L1_007_122G1_scaffold_179_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26364..27218
DNA (855bp) protein (285aa)
UPI0003D59D89 related cluster n=1 Tax=unknown RepID=UPI0003D59D89
HemK family modification methylase {ECO:0000313|EMBL:ETI83681.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
SAM-dependent methyltransferase
L1_007_122G1_scaffold_179_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27293..27694
DNA (402bp) protein (134aa)
UPI0003D5BF4C related cluster n=1 Tax=unknown RepID=UPI0003D5BF4C
Uncharacterized protein {ECO:0000313|EMBL:ETI83680.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27710..28333
DNA (624bp) protein (208aa)
UPI0003D69A40 related cluster n=1 Tax=unknown RepID=UPI0003D69A40
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:ETI83679.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L1_007_122G1_scaffold_179_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28344..29489
DNA (1146bp) protein (382aa)
UPI0003D5EEC7 related cluster n=1 Tax=unknown RepID=UPI0003D5EEC7
Uncharacterized protein {ECO:0000313|EMBL:ETI83678.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
L1_007_122G1_scaffold_179_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29486..30004
DNA (519bp) protein (173aa)
UPI0003D5A614 related cluster n=1 Tax=unknown RepID=UPI0003D5A614
Uncharacterized protein {ECO:0000313|EMBL:ETI83677.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30173..30979
DNA (807bp) protein (269aa)
atpB; H(+)-transporting two-sector ATPase F(0) A subunit (EC:3.6.3.14)
UPI0003D5FC21 related cluster n=1 Tax=unknown RepID=UPI0003D5FC21
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31037..31240
DNA (204bp) protein (68aa)
atpE; H(+)-transporting two-sector ATPase (EC:3.6.3.14)
UPI0003D5EE3B related cluster n=1 Tax=unknown RepID=UPI0003D5EE3B
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L1_007_122G1_scaffold_179_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31264..31818
DNA (555bp) protein (185aa)
UPI0003D66053 related cluster n=1 Tax=unknown RepID=UPI0003D66053
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP synthase subunit b
L1_007_122G1_scaffold_179_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31818..32648
DNA (831bp) protein (277aa)
UPI0003D64CA8 related cluster n=1 Tax=unknown RepID=UPI0003D64CA8
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP synthase F1 subunit delta
Displaying items 1-30 of 70 in total

View Taxonomy