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L1_007_122G1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 217 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_17_1
unknown

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2..205
DNA (204bp) protein (68aa)

This feature has no annotations

L1_007_122G1_scaffold_17_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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441..1469
DNA (1029bp) protein (343aa)
Putative transcriptional regulator, DegA family n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z2_9CLOT
Putative transcriptional regulator, DegA family {ECO:0000313|EMBL:EGB91105.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transcriptional regulators
L1_007_122G1_scaffold_17_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1624..2715
DNA (1092bp) protein (364aa)
Putative periplasmic binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z3_9CLOT
Putative periplasmic binding protein {ECO:0000313|EMBL:EGB91106.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_122G1_scaffold_17_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2786..4270
DNA (1485bp) protein (495aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z4_9CLOT
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EGB91107.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_17_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4283..5305
DNA (1023bp) protein (341aa)
ABC transporter, membrane spanning protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z5_9CLOT
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:EGB91108.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L1_007_122G1_scaffold_17_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5305..6297
DNA (993bp) protein (331aa)
Putative ABC transporter, permease protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z6_9CLOT
Putative ABC transporter, permease protein {ECO:0000313|EMBL:EGB91109.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
L1_007_122G1_scaffold_17_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6313..6660
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z7_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91110.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_17_8
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6679..7263
DNA (585bp) protein (195aa)
Ribose 5-phosphate isomerase RpiB (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Clostridium sp. D5 RepID=F0Z3Z8_9CLOT
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:EGB91111.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_17_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7540..8859
DNA (1320bp) protein (440aa)
Putative multiple sugar-binding protein MsmE n=1 Tax=Clostridium sp. D5 RepID=F0Z401_9CLOT
Putative multiple sugar-binding protein MsmE {ECO:0000313|EMBL:EGB91114.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
extracellular solute-binding protein
L1_007_122G1_scaffold_17_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8884..9753
DNA (870bp) protein (290aa)
Sugar transport n=1 Tax=Clostridium sp. D5 RepID=F0Z402_9CLOT
Sugar transport {ECO:0000313|EMBL:EGB91115.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
binding-protein-dependent transport system inner membrane protein
L1_007_122G1_scaffold_17_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9775..10614
DNA (840bp) protein (280aa)
Maltose transport system (Permease) n=1 Tax=Clostridium sp. D5 RepID=F0Z403_9CLOT
Maltose transport system (Permease) {ECO:0000313|EMBL:EGB91116.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
binding-protein-dependent transport system inner membrane protein
L1_007_122G1_scaffold_17_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10679..11992
DNA (1314bp) protein (438aa)
alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase (Melibiase) n=1 Tax=Clostridium sp. D5 RepID=F0Z404_9CLOT
Alpha-galactosidase (Melibiase) {ECO:0000313|EMBL:EGB91117.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_17_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12012..13136
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z405_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91118.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_17_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13213..14991
DNA (1779bp) protein (593aa)
Putative sensor histidine kinase n=1 Tax=Clostridium sp. D5 RepID=F0Z406_9CLOT
Putative sensor histidine kinase {ECO:0000313|EMBL:EGB91119.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
sensor with HAMP domain
L1_007_122G1_scaffold_17_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15010..16455
DNA (1446bp) protein (482aa)
Two-component response regulator n=1 Tax=Clostridium sp. D5 RepID=F0Z407_9CLOT
Two-component response regulator {ECO:0000313|EMBL:EGB91120.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
AraC family transcriptional regulator
L1_007_122G1_scaffold_17_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16766..18829
DNA (2064bp) protein (688aa)
Putative helix-turn-helix protein n=1 Tax=Clostridium sp. D5 RepID=F0Z408_9CLOT
Putative helix-turn-helix protein {ECO:0000313|EMBL:EGB91121.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted transcriptional regulators
L1_007_122G1_scaffold_17_17
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19006..20265)
DNA (1260bp) protein (420aa)
Two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FMK4_9CLOT
hypothetical protein
Two component transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EMS69728.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
L1_007_122G1_scaffold_17_18
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20289..22076)
DNA (1788bp) protein (596aa)
Putative signal transduction protein with a C-terminal ATPase domain id=3391747 bin=GWC2_Clostridiales_40_7 species=Clostridium sp. BNL1100 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
putative signal transduction protein with a C-terminal ATPase domain
Putative signal transduction protein with a C-terminal ATPase domain {ECO:0000313|EMBL:AEY65324.1}; Flags: Precursor;; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L1_007_122G1_scaffold_17_19
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22261..23535
DNA (1275bp) protein (425aa)
ABC transporter, solute-binding protein n=1 Tax=Blautia sp. KLE 1732 RepID=U2DGW0_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:ERI96040.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
sugar ABC transporter periplasmic protein
L1_007_122G1_scaffold_17_20
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

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23561..24430
DNA (870bp) protein (290aa)
Binding-protein-dependent transport systems inner membrane component id=3941261 bin=GWC2_Clostridiales_40_7 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
binding-protein-dependent transporters inner membrane component
Tax=GWC2_Clostridiales_40_7_curated
L1_007_122G1_scaffold_17_21
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

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24440..25270
DNA (831bp) protein (277aa)
ABC-type sugar transport system, permease component id=3941260 bin=GWC2_Clostridiales_40_7 species=Clostridium sp. BNL1100 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
sugar ABC transporter permease
Tax=GWC2_Clostridiales_40_7_curated
L1_007_122G1_scaffold_17_22
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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25277..26302
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00037443E4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGN39564.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L1_007_122G1_scaffold_17_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26517..28007)
DNA (1491bp) protein (497aa)
F5/8 type C domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B745_RUMGN
F5/8 type C domain protein {ECO:0000313|EMBL:EDN76307.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
internalin-like protein membrane anchor
L1_007_122G1_scaffold_17_24
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28350..28982)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IPP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS23865.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
transcriptional regulator
L1_007_122G1_scaffold_17_25
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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29224..30342
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2QFF4_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOH95242.1}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
2,6-dihydropseudooxynicotine hydrolase
L1_007_122G1_scaffold_17_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30632..31651
DNA (1020bp) protein (340aa)
SPFH domain / Band 7 family protein n=1 Tax=Clostridium sp. D5 RepID=F0Z424_9CLOT
SPFH domain / Band 7 family protein {ECO:0000313|EMBL:EGB91137.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Membrane protease subunits, stomatin/prohibitin homologs
L1_007_122G1_scaffold_17_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31654..31857
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z425_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91138.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_17_28
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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32126..32716
DNA (591bp) protein (197aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9ME41_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS69098.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_122G1_scaffold_17_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32838..33743
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z439_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91152.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_17_30
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33877..34596
DNA (720bp) protein (240aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Deoxyribose-phosphate aldolase n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYB5_9FIRM
hypothetical protein
Displaying items 1-30 of 217 in total

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