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L1_007_122G1_scaffold_37

Search features with annotation key words

Displaying items 1-30 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_37_1
unknown

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comp(2..70)
DNA (69bp) protein (23aa)

This feature has no annotations

L1_007_122G1_scaffold_37_2
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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175..3234
DNA (3060bp) protein (1020aa)
GHMP kinase protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CGN7_9CLOT
GHMP kinase protein {ECO:0000313|EMBL:ERI66516.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Predicted kinase related to galactokinase and mevalonate kinase
L1_007_122G1_scaffold_37_3
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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3244..4020
DNA (777bp) protein (259aa)
Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (EC:3.1.3.25)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EFD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA99293.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L1_007_122G1_scaffold_37_4
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4013..4885)
DNA (873bp) protein (291aa)
AraC family transcriptional regulator n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B7ABF2
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADU27864.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L1_007_122G1_scaffold_37_5
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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5164..6210
DNA (1047bp) protein (349aa)
rmlB_1; dTDP-glucose 4,6-dehydratase, RmlB_1 (EC:4.2.1.46)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1134834 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium R446.;"
GDP-mannose 4,6-dehydratase n=19 Tax=Firmicutes RepID=C9BQ41_ENTFC
L1_007_122G1_scaffold_37_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6223..7164
DNA (942bp) protein (314aa)
Nucleoside-diphosphate-sugar epimerases (EC:1.1.1.271)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
GDP-L-fucose synthase n=3 Tax=Roseburia RepID=D4KMF9_9FIRM
L1_007_122G1_scaffold_37_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7184..8500
DNA (1317bp) protein (439aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.13)
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKK9_9FIRM
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:EFB76517.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_122G1_scaffold_37_8
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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8469..9476
DNA (1008bp) protein (336aa)
mannose-6-phosphate isomerase, class I (EC:5.3.1.8)
Mannose-6-phosphate isomerase, class I n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KQG8_9FIRM
Mannose-6-phosphate isomerase, class I {ECO:0000313|EMBL:EOS48665.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
L1_007_122G1_scaffold_37_9
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9489..11192
DNA (1704bp) protein (568aa)
Phosphomannomutase (EC:5.4.2.8)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE95789.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
L1_007_122G1_scaffold_37_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11319..11927)
DNA (609bp) protein (203aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Clostridium sp. D5 RepID=F0YWH8_9CLOT
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EGB94016.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_37_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12030..12917)
DNA (888bp) protein (296aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Clostridium sp. D5 RepID=F0YWH9_9CLOT
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EGB94017.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_37_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12947..13975)
DNA (1029bp) protein (343aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Clostridium sp. D5 RepID=F0YWI0_9CLOT
L1_007_122G1_scaffold_37_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14019..14915)
DNA (897bp) protein (299aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0YWI1_9CLOT
glucose-1-phosphate thymidylyltransferase
L1_007_122G1_scaffold_37_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15077..16264)
DNA (1188bp) protein (396aa)
Putative transcriptional regulatory protein n=1 Tax=Clostridium sp. D5 RepID=F0YWI2_9CLOT
Putative transcriptional regulatory protein {ECO:0000313|EMBL:EGB94020.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_007_122G1_scaffold_37_15
unknown

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comp(16397..16540)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_007_122G1_scaffold_37_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16836..19346)
DNA (2511bp) protein (837aa)
Putative membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0YWI3_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EGB94021.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_37_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19400..21511)
DNA (2112bp) protein (704aa)
Antibiotic ABC transporter, permease protein n=1 Tax=Clostridium sp. D5 RepID=F0YWI4_9CLOT
Antibiotic ABC transporter, permease protein {ECO:0000313|EMBL:EGB94022.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_37_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21687..22292
DNA (606bp) protein (202aa)
Putative transcriptional regulator, TetR family n=1 Tax=Clostridium sp. D5 RepID=F0YWI5_9CLOT
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EGB94023.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
TetR family transcriptional regulator
L1_007_122G1_scaffold_37_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22445..22594
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Clostridium sp. D5 RepID=F0YWI6_9CLOT
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
LSU ribosomal protein L33P
L1_007_122G1_scaffold_37_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22617..22817
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=1 Tax=Clostridium sp. D5 RepID=F0YWI7_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
protein translocase subunit secE/sec61 gamma
L1_007_122G1_scaffold_37_21
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22843..23361
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium sp. D5 RepID=F0YWI8_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcription antitermination protein nusG
L1_007_122G1_scaffold_37_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23414..23839
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Clostridium sp. D5 RepID=F0YWI9_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
LSU ribosomal protein L11P
L1_007_122G1_scaffold_37_23
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23938..24630
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Clostridium sp. D5 RepID=F0YWJ0_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ribosomal protein L1, bacterial/chloroplast
L1_007_122G1_scaffold_37_24
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24703..25911)
DNA (1209bp) protein (403aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HQV5_9CLOT
histidine kinase
L1_007_122G1_scaffold_37_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25947..26618)
DNA (672bp) protein (224aa)
Two-component system response regulator n=1 Tax=Clostridium bolteae 90B8 RepID=N9YYA3_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ32465.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L1_007_122G1_scaffold_37_26
Shuttleworthia sp. MSX8B, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26814..28082
DNA (1269bp) protein (423aa)
Extracellular solute-binding protein family 1 n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T365_ROSHA
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EUB15757.1}; TaxID=936574 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;" source="Shuttleworthia sp. MSX8B.;"
family 1 extracellular solute-binding protein
L1_007_122G1_scaffold_37_27
Shuttleworthia sp. MSX8B, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28143..29036
DNA (894bp) protein (298aa)
ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAS1_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EUB15864.1}; TaxID=936574 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;" source="Shuttleworthia sp. MSX8B.;"
binding-protein-dependent transporters inner membrane component
L1_007_122G1_scaffold_37_28
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29033..29860
DNA (828bp) protein (276aa)
ABC transporter, permease protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAS2_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EET62053.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
binding-protein-dependent transport systems inner membrane component
L1_007_122G1_scaffold_37_29
Shuttleworthia sp. MSX8B, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29874..31391
DNA (1518bp) protein (506aa)
Alpha-N-arabinofuranosidase 1 n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAS3_9FIRM
Alpha-L-arabinofuranosidase C-terminal domain protein {ECO:0000313|EMBL:EUB15792.1}; TaxID=936574 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;" source="Shuttleworthia sp. MSX8B.;"
alpha-N-arabinofuranosidase
L1_007_122G1_scaffold_37_30
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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31384..32364
DNA (981bp) protein (327aa)
Predicted beta-xylosidase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RGF0_9FIRM
Predicted beta-xylosidase {ECO:0000313|EMBL:CDC44434.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
beta-xylosidase
Displaying items 1-30 of 153 in total

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