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L1_007_122G1_scaffold_44

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_44_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(112..972)
-----------------
DNA (861bp)
protein (287aa)
Putative transcriptional regulator, AraC family n=1 Tax=Clostridium sp. D5 RepID=F0YV09_9CLOT
Putative transcriptional regulator, AraC family {ECO:0000313|EMBL:EGB94729.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
AraC family transcriptional regulator
L1_007_122G1_scaffold_44_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1097..2209
-----------------
DNA (1113bp)
protein (371aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YV08_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94728.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_44_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2454..3161)
-----------------
DNA (708bp)
protein (236aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. D5 RepID=F0YV07_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EGB94727.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transcriptional regulators
L1_007_122G1_scaffold_44_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3428..4387)
-----------------
DNA (960bp)
protein (320aa)
glycyl-radical enzyme activating protein family (EC:1.97.1.4)
Putative pyruvate formate-lyase activating enzyme n=1 Tax=Clostridium sp. D5 RepID=F0Z0U9_9CLOT
Putative pyruvate formate-lyase activating enzyme {ECO:0000313|EMBL:EGB92051.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_44_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4602..5915)
-----------------
DNA (1314bp)
protein (438aa)
Transporter, major facilitator family n=1 Tax=Clostridium sp. D5 RepID=F0YVD3_9CLOT
Transporter, major facilitator family {ECO:0000313|EMBL:EGB94853.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
major facilitator superfamily protein
L1_007_122G1_scaffold_44_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6013..8655)
-----------------
DNA (2643bp)
protein (881aa)
Formate C-acetyltransferase (EC:2.3.1.54)
Putative formate acetyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z0V1_9CLOT
Putative formate acetyltransferase {ECO:0000313|EMBL:EGB92053.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_44_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9093..9815
-----------------
DNA (723bp)
protein (241aa)
DNA-binding response regulator, LuxR family n=1 Tax=Clostridium sp. D5 RepID=F0Z0V2_9CLOT
DNA-binding response regulator, LuxR family {ECO:0000313|EMBL:EGB92054.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcriptional regulator, LuxR family
L1_007_122G1_scaffold_44_8
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9842..11797
-----------------
DNA (1956bp)
protein (652aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Putative non-motile and phage-resistance protein n=1 Tax=Clostridium sp. D5 RepID=F0Z0V3_9CLOT
integral membrane sensor signal transduction histidine kinase
L1_007_122G1_scaffold_44_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12206..13102
-----------------
DNA (897bp)
protein (299aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Clostridium sp. D5 RepID=F0Z0V5_9CLOT
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EGB92057.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
response regulator receiver protein
L1_007_122G1_scaffold_44_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13220..14530)
-----------------
DNA (1311bp)
protein (437aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YV06_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94726.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_44_11
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14770..15378)
-----------------
DNA (609bp)
protein (203aa)
KpsF/GutQ family sugar isomerase n=1 Tax=Clostridium sp. ASF502 RepID=N2A487_9CLOT
KpsF/GutQ family sugar isomerase {ECO:0000313|EMBL:EMZ20895.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
SIS domain protein
L1_007_122G1_scaffold_44_12
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16399..17121)
-----------------
DNA (723bp)
protein (241aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MLM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71566.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
RNA-directed DNA polymerase
L1_007_122G1_scaffold_44_13
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17185..17715)
-----------------
DNA (531bp)
protein (177aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WWM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX67829.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Retron-type reverse transcriptase
L1_007_122G1_scaffold_44_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18330..20903)
-----------------
DNA (2574bp)
protein (858aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037B1ACB
ABC transporter permease {ECO:0000313|EMBL:CEN31377.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
ABC transporter permease
L1_007_122G1_scaffold_44_15
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20913..21581)
-----------------
DNA (669bp)
protein (223aa)
ABC transporter ATP-binding protein n=1 Tax=Blautia producta RepID=UPI00036360EE
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOS71201.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
ABC-type antimicrobial peptide transport system, ATPase component
L1_007_122G1_scaffold_44_16
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21689..22621)
-----------------
DNA (933bp)
protein (311aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Signal transduction histidine kinase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYM6_CLOCD
signal transduction histidine kinase
L1_007_122G1_scaffold_44_17
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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comp(22623..23417)
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XE98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA13883.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L1_007_122G1_scaffold_44_18
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23708..24235)
-----------------
DNA (528bp)
protein (176aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EIR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ56494.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Bacterial inner membrane protein.
L1_007_122G1_scaffold_44_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24470..27100)
-----------------
DNA (2631bp)
protein (877aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=1 Tax=Clostridium sp. D5 RepID=F0YUZ4_9CLOT
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EGB94714.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_44_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27375..28817)
-----------------
DNA (1443bp)
protein (481aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium sp. D5 RepID=F0YUZ3_9CLOT
L1_007_122G1_scaffold_44_21
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29034..30401)
-----------------
DNA (1368bp)
protein (456aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium sp. D5 RepID=F0YUZ2_9CLOT
L1_007_122G1_scaffold_44_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30614..32005)
-----------------
DNA (1392bp)
protein (464aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Clostridium sp. D5 RepID=F0YUZ1_9CLOT
L1_007_122G1_scaffold_44_23
unknown

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32753..33019
-----------------
DNA (267bp)
protein (89aa)

This feature has no annotations

L1_007_122G1_scaffold_44_24
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32985..33725)
-----------------
DNA (741bp)
protein (247aa)
DNA repair protein RecO n=1 Tax=Clostridium sp. D5 RepID=F0YUZ0_9CLOT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
DNA repair protein RecO
L1_007_122G1_scaffold_44_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33667..33852)
-----------------
DNA (186bp)
protein (62aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YUY9_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94709.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_44_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34109..35053)
-----------------
DNA (945bp)
protein (315aa)
GTPase Era n=1 Tax=Clostridium sp. D5 RepID=F0YUY8_9CLOT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
GTP-binding protein Era
L1_007_122G1_scaffold_44_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35170..38097)
-----------------
DNA (2928bp)
protein (976aa)
Peptidase, M16 family n=1 Tax=Clostridium sp. D5 RepID=F0YUY7_9CLOT
Peptidase, M16 family {ECO:0000313|EMBL:EGB94707.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_007_122G1_scaffold_44_28
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38455..39213)
-----------------
DNA (759bp)
protein (253aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUY6_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGB94706.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
fecE; Iron(III) dicitrate transport ATP-binding protein
L1_007_122G1_scaffold_44_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39230..40288)
-----------------
DNA (1059bp)
protein (353aa)
Putative iron compound ABC transporter, permease protein n=1 Tax=Clostridium sp. D5 RepID=F0YUY5_9CLOT
Putative iron compound ABC transporter, permease protein {ECO:0000313|EMBL:EGB94705.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC transporter permease
L1_007_122G1_scaffold_44_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40319..41338)
-----------------
DNA (1020bp)
protein (340aa)
Iron(III) dicitrate-binding periplasmic protein HmuT n=1 Tax=Clostridium sp. D5 RepID=F0YUY4_9CLOT
Iron(III) dicitrate-binding periplasmic protein HmuT {ECO:0000313|EMBL:EGB94704.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic binding protein
Displaying items 1-30 of 121 in total

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