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L1_007_122G1_scaffold_98

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_98_1
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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948..2057
DNA (1110bp) protein (370aa)
Protein RecA n=1 Tax=Clostridium sp. D5 RepID=F0Z4H6_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
protein RecA
L1_007_122G1_scaffold_98_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2059..2673
DNA (615bp) protein (205aa)
Regulatory protein RecX n=1 Tax=Clostridium sp. D5 RepID=F0Z4H7_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
recX; recombination regulator RecX
L1_007_122G1_scaffold_98_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2757..4310
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Ribonuclease Y n=1 Tax=Clostridium sp. D5 RepID=F0Z4H8_9CLOT
metal dependent phosphohydrolase
L1_007_122G1_scaffold_98_4
unknown

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4504..4593
DNA (90bp) protein (30aa)

This feature has no annotations

L1_007_122G1_scaffold_98_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4706..5902
DNA (1197bp) protein (399aa)
Aspartate transaminase n=1 Tax=Clostridium sp. D5 RepID=F0Z4H9_9CLOT
Aspartate transaminase {ECO:0000313|EMBL:EGB90995.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
aspartate/tyrosine/aromatic aminotransferase
L1_007_122G1_scaffold_98_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5923..6468
DNA (546bp) protein (182aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
MutT/NUDIX family protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4I0_9CLOT
MutT/NUDIX family protein {ECO:0000313|EMBL:EGB90996.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_98_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6520..7059
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4I1_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB90997.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_98_8
unknown

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comp(7669..7848)
DNA (180bp) protein (60aa)

This feature has no annotations

L1_007_122G1_scaffold_98_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7861..9174)
DNA (1314bp) protein (438aa)
Putative stage V sporulation protein B (Spore cortex synthesis) n=1 Tax=Clostridium sp. D5 RepID=F0Z4I2_9CLOT
Putative stage V sporulation protein B (Spore cortex synthesis) {ECO:0000313|EMBL:EGB90998.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L1_007_122G1_scaffold_98_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9409..9867
DNA (459bp) protein (153aa)
Rrf2 family protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4I3_9CLOT
Rrf2 family protein {ECO:0000313|EMBL:EGB90999.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcriptional regulator, BadM/Rrf2 family
L1_007_122G1_scaffold_98_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9958..11154
DNA (1197bp) protein (399aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase NifS n=1 Tax=Clostridium sp. D5 RepID=F0Z4I4_9CLOT
L1_007_122G1_scaffold_98_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11323..11766
DNA (444bp) protein (148aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Clostridium sp. D5 RepID=F0Z4I5_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EGB91001.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L1_007_122G1_scaffold_98_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11766..12836
DNA (1071bp) protein (357aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. D5 RepID=F0Z4I6_9CLOT
L1_007_122G1_scaffold_98_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12833..13651
DNA (819bp) protein (273aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Putative histidinol-phosphatase (HolPase) n=1 Tax=Clostridium sp. D5 RepID=F0Z4I7_9CLOT
Putative histidinol-phosphatase (HolPase) {ECO:0000313|EMBL:EGB91003.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_98_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13803..14816
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Clostridium sp. D5 RepID=F0Z4I8_9CLOT
L1_007_122G1_scaffold_98_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14977..16170
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Clostridium sp. D5 RepID=F0Z4I9_9CLOT
L1_007_122G1_scaffold_98_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16293..17042
DNA (750bp) protein (250aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium sp. D5 RepID=F0Z4J0_9CLOT
L1_007_122G1_scaffold_98_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17337..18158
DNA (822bp) protein (274aa)
Pectin acetylesterase n=1 Tax=Clostridium sp. D5 RepID=F0Z4J1_9CLOT
Pectin acetylesterase {ECO:0000313|EMBL:EGB91007.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
acetyl esterase
L1_007_122G1_scaffold_98_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18234..19772
DNA (1539bp) protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium sp. D5 RepID=F0Z4J2_9CLOT
L1_007_122G1_scaffold_98_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20017..21201)
DNA (1185bp) protein (395aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4J3_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91009.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_98_21
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21520..22023
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. D5 RepID=F0Z4J4_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transcription elongation factor GreA
L1_007_122G1_scaffold_98_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22065..22715
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
5'-nucleotidase (Nucleoside 5'-monophosphatephosphohydrolase) n=1 Tax=Clostridium sp. D5 RepID=F0Z4J5_9CLOT
5'-nucleotidase (Nucleoside 5'-monophosphatephosphohydrolase) {ECO:0000313|EMBL:EGB91011.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_98_23
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23132..23392
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4J6_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91012.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_98_24
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23658..27974)
DNA (4317bp) protein (1439aa)
CoA-substrate-specific enzyme activase domain protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4J7_9CLOT
CoA-substrate-specific enzyme activase domain protein {ECO:0000313|EMBL:EGB91013.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
CoA-substrate-specific enzyme activase, putative
L1_007_122G1_scaffold_98_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28242..29069
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4J8_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91014.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_98_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29115..30551
DNA (1437bp) protein (479aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Clostridium sp. D5 RepID=F0Z4J9_9CLOT
L1_007_122G1_scaffold_98_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31236..31949
DNA (714bp) protein (238aa)
Sugar-specific transcriptional regulator TrmB superfamily n=1 Tax=Clostridium sp. D5 RepID=F0Z4K0_9CLOT
Sugar-specific transcriptional regulator TrmB superfamily {ECO:0000313|EMBL:EGB91016.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Predicted transcriptional regulators
L1_007_122G1_scaffold_98_28
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31946..33220
DNA (1275bp) protein (425aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Protein TabA n=1 Tax=Clostridium sp. D5 RepID=F0Z4K1_9CLOT
Protein TabA {ECO:0000313|EMBL:EGB91017.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_98_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33697..33909
DNA (213bp) protein (71aa)
Toxin-antitoxin system, antitoxin component, Xre family n=1 Tax=Clostridium sp. D5 RepID=F0YYF7_9CLOT
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EGB93259.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_98_30
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34156..34515
DNA (360bp) protein (120aa)
HicB family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D921_9CLOT
HicB family protein {ECO:0000313|EMBL:EEG52172.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
HicB
Displaying items 1-30 of 110 in total

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