ggKbase home page

L1_007_122G1_scaffold_252

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_122G1_scaffold_252_1
unknown

Not on your lists

370..489
DNA (120bp) protein (40aa)

This feature has no annotations

L1_007_122G1_scaffold_252_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

564..1022
DNA (459bp) protein (153aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B7S9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76022.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L1_007_122G1_scaffold_252_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1393..2697)
DNA (1305bp) protein (435aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Histidine protein kinase sensor protein n=1 Tax=Clostridium sp. D5 RepID=F0Z483_9CLOT
integral membrane sensor signal transduction histidine kinase
L1_007_122G1_scaffold_252_4
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2826..3524)
DNA (699bp) protein (233aa)
DNA-binding response regulator DltR n=1 Tax=Clostridium sp. D5 RepID=F0Z484_9CLOT
DNA-binding response regulator DltR {ECO:0000313|EMBL:EGB91197.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_122G1_scaffold_252_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3743..5950
DNA (2208bp) protein (736aa)
Putative bacterial extracellular solute-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z485_9CLOT
Putative bacterial extracellular solute-binding protein {ECO:0000313|EMBL:EGB91198.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
ABC transporter substrate-binding protein
L1_007_122G1_scaffold_252_6
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5892..6815
DNA (924bp) protein (308aa)
ABC-type sugar transport system, permease component n=1 Tax=Clostridium sp. D5 RepID=F0Z486_9CLOT
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EGB91199.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_007_122G1_scaffold_252_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6757..7665
DNA (909bp) protein (303aa)
Sugar permease n=1 Tax=Clostridium sp. D5 RepID=F0Z487_9CLOT
Sugar permease {ECO:0000313|EMBL:EGB91200.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_007_122G1_scaffold_252_8
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7673..9112
DNA (1440bp) protein (480aa)
Putative LigA n=1 Tax=Clostridium sp. D5 RepID=F0Z488_9CLOT
Putative LigA {ECO:0000313|EMBL:EGB91201.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_9
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9124..10143
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z489_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91202.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10356..11456
DNA (1101bp) protein (367aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z490_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91203.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_11
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11519..12313
DNA (795bp) protein (265aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NF61_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06739.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Beta-propeller domains of methanol dehydrogenase type
L1_007_122G1_scaffold_252_12
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12413..13510
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z490_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91203.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_13
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13572..14579
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z491_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91204.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14635..15990
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z492_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91205.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_15
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16157..17272)
DNA (1116bp) protein (372aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=1 Tax=Clostridium sp. D5 RepID=F0Z493_9CLOT
Glucose-1-phosphate adenylyltransferase, GlgD subunit {ECO:0000313|EMBL:EGB91206.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_16
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17274..18413)
DNA (1140bp) protein (380aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Clostridium sp. D5 RepID=F0Z494_9CLOT
L1_007_122G1_scaffold_252_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18792..19877
DNA (1086bp) protein (362aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Clostridium sp. D5 RepID=F0Z495_9CLOT
6-phosphofructokinase I {ECO:0000313|EMBL:EGB91208.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_18
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19939..21516
DNA (1578bp) protein (526aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, gamma and tau subunits n=1 Tax=Clostridium sp. D5 RepID=F0Z496_9CLOT
DNA polymerase III, gamma and tau subunits {ECO:0000313|EMBL:EGB91209.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_19
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21519..21872
DNA (354bp) protein (118aa)
Nucleoid-associated protein HMPREF0240_03948 n=1 Tax=Clostridium sp. D5 RepID=F0Z497_9CLOT
Nucleoid-associated protein HMPREF0240_03948 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
conserved hypothetical protein TIGR00103
L1_007_122G1_scaffold_252_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21979..22575
DNA (597bp) protein (199aa)
Recombination protein RecR n=1 Tax=Clostridium sp. D5 RepID=F0Z498_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
recombination protein RecR
L1_007_122G1_scaffold_252_21
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22605..23708
DNA (1104bp) protein (368aa)
Putative ribose operon repressor n=1 Tax=Clostridium sp. D5 RepID=F0Z499_9CLOT
Putative ribose operon repressor {ECO:0000313|EMBL:EGB91212.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
putative transcriptional regulator
L1_007_122G1_scaffold_252_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23973..24626
DNA (654bp) protein (218aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transaldolase, putative, TalC family (EC:2.2.1.2)
Probable transaldolase n=1 Tax=Clostridium sp. D5 RepID=F0Z4A0_9CLOT
L1_007_122G1_scaffold_252_23
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24681..25517
DNA (837bp) protein (279aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase, N-subunit n=1 Tax=Clostridium sp. D5 RepID=F0Z4A1_9CLOT
Transketolase, N-subunit {ECO:0000313|EMBL:EGB91214.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_24
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25505..26443
DNA (939bp) protein (313aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, C-subunit n=1 Tax=Clostridium sp. D5 RepID=F0Z4A2_9CLOT
Transketolase, C-subunit {ECO:0000313|EMBL:EGB91215.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_122G1_scaffold_252_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26509..27021)
DNA (513bp) protein (171aa)
HD domain protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4A3_9CLOT
HD domain protein {ECO:0000313|EMBL:EGB91216.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27337..28128
DNA (792bp) protein (264aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=Clostridium sp. D5 RepID=F0Z4A4_9CLOT
Toxin-antitoxin system, toxin component, RelE family {ECO:0000313|EMBL:EGB91217.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
transposase and inactivated derivatives
L1_007_122G1_scaffold_252_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28198..29355
DNA (1158bp) protein (386aa)
Putative LysM domain protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4A5_9CLOT
Putative LysM domain protein {ECO:0000313|EMBL:EGB91218.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
LysM domain.
L1_007_122G1_scaffold_252_28
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29408..30601
DNA (1194bp) protein (398aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4A6_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91219.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L1_007_122G1_scaffold_252_29
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30610..31428
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z4A7_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91220.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Colicin V production protein.
L1_007_122G1_scaffold_252_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31723..32340
DNA (618bp) protein (206aa)
Methyltransferase, UbiE/COQ5 family n=1 Tax=Clostridium sp. D5 RepID=F0YUP9_9CLOT
Methyltransferase, UbiE/COQ5 family {ECO:0000313|EMBL:EGB94619.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
Displaying items 1-30 of 55 in total

View Taxonomy