ggKbase home page

L1_007_365G1_scaffold_2028

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_2028_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(103..639)
DNA (537bp) protein (179aa)
VanZ-like protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PPX9_9FIRM
VanZ-like protein {ECO:0000313|EMBL:ERK52565.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
VanZ family protein
L1_007_365G1_scaffold_2028_2
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(677..1192)
DNA (516bp) protein (172aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P066_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCZ03051.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_365G1_scaffold_2028_3
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1432..2244)
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T3W7_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97254.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_2028_4
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2437..3186)
DNA (750bp) protein (250aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TU54_BACCJ
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein {ECO:0000313|EMBL:ADU28514.1}; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
L1_007_365G1_scaffold_2028_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3330..4286)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99237.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_007_365G1_scaffold_2028_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4585..6312
DNA (1728bp) protein (576aa)
Putative transposase, IS4 family n=3 Tax=root RepID=C0FW76_9FIRM
Putative transposase, IS4 family {ECO:0000313|EMBL:EEG93154.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_007_365G1_scaffold_2028_7
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6443..7081)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94358.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_007_365G1_scaffold_2028_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7287..8921)
DNA (1635bp) protein (545aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4C7_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK90267.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_365G1_scaffold_2028_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8934..9833)
DNA (900bp) protein (300aa)
Recombinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2I5_9FIRM
Recombinase.
Recombinase {ECO:0000313|EMBL:CBL13825.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_365G1_scaffold_2028_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9805..11421)
DNA (1617bp) protein (539aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4C9_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK90269.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_365G1_scaffold_2028_11
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11512..11733)
DNA (222bp) protein (74aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=C0FSV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94362.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_007_365G1_scaffold_2028_12
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11734..12129)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94363.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_007_365G1_scaffold_2028_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12835..13260)
DNA (426bp) protein (142aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=Roseburia intestinalis RepID=D4KL61_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL07613.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_007_365G1_scaffold_2028_14
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13702..13845)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94366.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L1_007_365G1_scaffold_2028_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13934..15241)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FQP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG95089.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_007_365G1_scaffold_2028_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15238..15978)
DNA (741bp) protein (247aa)
Response regulator of the LytR/AlgR family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZW0_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBL12900.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_365G1_scaffold_2028_17
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15956..16357)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9ITG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS25210.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Helix-turn-helix.
L1_007_365G1_scaffold_2028_18
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16833..17195)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FXS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG92622.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
transposase IS4 family protein
Displaying 18 items

View Taxonomy