ggKbase home page

L1_007_365G1_scaffold_2184

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_2184_1
unknown

Not on your lists

2..139
DNA (138bp) protein (46aa)

This feature has no annotations

L1_007_365G1_scaffold_2184_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(220..375)
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYE4_BIFBU
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE88526.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_365G1_scaffold_2184_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(865..1296)
DNA (432bp) protein (144aa)
Putative membrane protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CQH9_BIFBR
threonine/homoserine efflux transporter, non functional product
Putative membrane protein {ECO:0000313|EMBL:ERI86780.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_2184_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1329..2633)
DNA (1305bp) protein (435aa)
Transposase, IS605 OrfB family n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQM9_BIFBR
Transposase {ECO:0000313|EMBL:BAR00706.1}; Transposase, IS605 OrfB family {ECO:0000313|EMBL:EFE88524.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
transposase
L1_007_365G1_scaffold_2184_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2626..3213)
DNA (588bp) protein (196aa)
IS1602, resolvase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L048_BIFBR
Resolvase, N-terminal domain protein
Resolvase protein {ECO:0000313|EMBL:ERI86341.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_2184_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3365..3541)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2C8G9_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI86779.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
threonine and homoserine efflux system
L1_007_365G1_scaffold_2184_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3624..4922
DNA (1299bp) protein (433aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
DNA polymerase IV n=3 Tax=Bifidobacterium breve RepID=D4BQM6_BIFBR
DNA polymerase IV
L1_007_365G1_scaffold_2184_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4923..6110)
DNA (1188bp) protein (396aa)
Aminotransferase n=3 Tax=Bifidobacterium breve RepID=F9XYE6_BIFBU
Aminotransferase
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:ERI86777.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_2184_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6203..6523)
DNA (321bp) protein (107aa)
4Fe-4S binding domain protein n=6 Tax=Bifidobacterium breve RepID=F6C7M3_BIFBA
Ferredoxin
4Fe-4S binding domain protein {ECO:0000313|EMBL:AEF27861.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_365G1_scaffold_2184_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6588..8114)
DNA (1527bp) protein (509aa)
Amino acid permease n=3 Tax=Bifidobacterium breve RepID=F9XYE8_BIFBU
Amino acid permease
Amino acid permease {ECO:0000313|EMBL:ABE96332.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_365G1_scaffold_2184_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8276..9499)
DNA (1224bp) protein (408aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZNP6_BIFBR
UDP-N-acetylenolpyruvoylglucosamine reductase
L1_007_365G1_scaffold_2184_12
Bifidobacterium reuteri, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9631..9798)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=25 Tax=Bifidobacterium RepID=RL33_BIFLO
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1437610 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium reuteri DSM 23975.;"
L1_007_365G1_scaffold_2184_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10436..10729)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=7 Tax=Bifidobacterium breve RepID=F9XYF1_BIFBU
10 kDa chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_2184_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10886..12082)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=D4BQL8_BIFBR
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76008.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_365G1_scaffold_2184_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12134..12598)
DNA (465bp) protein (155aa)
acetyltransferase n=1 Tax=Bifidobacterium breve RepID=UPI0002F4DDF0
Ribosomal-protein-S5-alanine acetyltransferase
Ribosomal-protein-S5-alanine acetyltransferase {ECO:0000313|EMBL:AHJ20011.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_365G1_scaffold_2184_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12815..13420
DNA (606bp) protein (202aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZNQ2_BIFBR
5-formyltetrahydrofolate cyclo-ligase
L1_007_365G1_scaffold_2184_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13568..13753
DNA (186bp) protein (62aa)
Type I antifreeze protein, regulatory protein of the FmdB family n=3 Tax=Bifidobacterium breve RepID=F9XYF4_BIFBU
zinc ribbon domain protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76011.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_365G1_scaffold_2184_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13891..14457
DNA (567bp) protein (189aa)
Flagella basal body P-ring formation protein FlgA n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A1D7_BIFBR
Flagella basal body P-ring formation protein FlgA {ECO:0000313|EMBL:EPD76012.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
putative secreted protein with Flp pilus assembly protein CpaB domain
L1_007_365G1_scaffold_2184_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14697..14897)
DNA (201bp) protein (67aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=H3KZ00_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY33304.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_365G1_scaffold_2184_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14900..18520)
DNA (3621bp) protein (1207aa)
DNA and RNA helicase related protein (EC:3.6.1.-)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=F6C7N4_BIFBA
Uncharacterized protein {ECO:0000313|EMBL:AEF27003.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_365G1_scaffold_2184_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18529..19839)
DNA (1311bp) protein (437aa)
FHA domain protein n=2 Tax=Bifidobacterium breve RepID=D4BQL1_BIFBR
Hypothetical protein with FHA domain
FHA domain protein {ECO:0000313|EMBL:EFE88506.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_365G1_scaffold_2184_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20098..20511)
DNA (414bp) protein (138aa)
50S ribosomal protein L7/L12 n=6 Tax=Bifidobacterium breve RepID=F6C7N6_BIFBA
LSU ribosomal protein L12P (L7/L12)
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_365G1_scaffold_2184_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20621..21043)
DNA (423bp) protein (141aa)
50S ribosomal protein L10 n=5 Tax=Bifidobacterium breve RepID=F6C7N7_BIFBA
LSU ribosomal protein L10P
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Displaying 23 items

View Taxonomy