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L1_007_365G1_scaffold_2353

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_2353_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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739..1488
-----------------
DNA (750bp)
protein (250aa)
Transcriptional regulators of sugar metabolism n=1 Tax=Roseburia sp. CAG:18 RepID=R5US09_9FIRM
Transcriptional regulators of sugar metabolism {ECO:0000313|EMBL:CCZ78499.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcriptional regulators of sugar metabolism
L1_007_365G1_scaffold_2353_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1485..2399
-----------------
DNA (915bp)
protein (305aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJS5_9FIRM
L1_007_365G1_scaffold_2353_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2412..4445
-----------------
DNA (2034bp)
protein (678aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78497.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L1_007_365G1_scaffold_2353_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4500..4757
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4Z7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78496.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Phosphotransferase System HPr (HPr) Family
L1_007_365G1_scaffold_2353_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4816..6435
-----------------
DNA (1620bp)
protein (540aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKF7_9FIRM
L1_007_365G1_scaffold_2353_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6554..9112
-----------------
DNA (2559bp)
protein (853aa)
Excinuclease ATPase subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5URY5_9FIRM
Excinuclease ATPase subunit {ECO:0000313|EMBL:CCZ78494.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Excinuclease ATPase subunit
L1_007_365G1_scaffold_2353_7
unknown

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9140..9319
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

L1_007_365G1_scaffold_2353_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9356..9658
-----------------
DNA (303bp)
protein (101aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78493.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_2353_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9861..11213)
-----------------
DNA (1353bp)
protein (451aa)
Putative efflux protein MATE family n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCJ7_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCZ78492.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative efflux protein, MATE family
L1_007_365G1_scaffold_2353_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11461..12315
-----------------
DNA (855bp)
protein (285aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4X2_9FIRM
conserved hypothetical protein TIGR00096
L1_007_365G1_scaffold_2353_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12332..14077)
-----------------
DNA (1746bp)
protein (582aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78490.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_2353_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14228..14812
-----------------
DNA (585bp)
protein (195aa)
Uncharacterized membrane protein required for spore maturation in B.subtilis n=1 Tax=Roseburia sp. CAG:18 RepID=R5URX8_9FIRM
Uncharacterized membrane protein required for spore maturation in B.subtilis {ECO:0000313|EMBL:CCZ78489.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized membrane protein, required for spore maturation in B.subtilis.
L1_007_365G1_scaffold_2353_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14809..15333
-----------------
DNA (525bp)
protein (175aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78488.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
spore maturation protein B
L1_007_365G1_scaffold_2353_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15505..16560
-----------------
DNA (1056bp)
protein (352aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VCJ0_9FIRM
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CCZ78487.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative methyl-accepting chemotaxis protein
L1_007_365G1_scaffold_2353_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16688..17410
-----------------
DNA (723bp)
protein (241aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4W7_9FIRM
L1_007_365G1_scaffold_2353_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17496..17687
-----------------
DNA (192bp)
protein (64aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78485.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_2353_17
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17779..18207)
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HWP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29182.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
XRE family transcriptional regulator
L1_007_365G1_scaffold_2353_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18526..18822
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78483.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Global regulator protein family.
L1_007_365G1_scaffold_2353_19
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19015..19110
-----------------
DNA (96bp)
protein (32aa)
Flagellin and related hook-associated proteins n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E2K5_9FIRM
Flagellin and related hook-associated proteins
Uncharacterized protein {ECO:0000313|EMBL:ACR77122.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Displaying 19 items

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