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L1_007_365G1_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_32_1
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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829..1173
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5B0_BLAHA
Putative uncharacterized protein {ECO:0000313|EMBL:EEG49968.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
hypothetical protein
L1_007_365G1_scaffold_32_2
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1204..3222
-----------------
DNA (2019bp)
protein (673aa)
Archaeal/vacuolar-type H+-ATPase subunit I (EC:3.6.3.14)
Uncharacterized protein n=2 Tax=Blautia RepID=R5C2J3_9FIRM
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
L1_007_365G1_scaffold_32_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3222..3698
-----------------
DNA (477bp)
protein (159aa)
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C n=2 Tax=Dorea RepID=A6BF37_9FIRM
ATP synthase subunit C {ECO:0000313|EMBL:CDE19472.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_007_365G1_scaffold_32_4
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3742..4335
-----------------
DNA (594bp)
protein (198aa)
V-type proton ATPase subunit E n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1F7_9CLOT
V-type proton ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; V-ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L1_007_365G1_scaffold_32_5
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4370..5341
-----------------
DNA (972bp)
protein (324aa)
Archaeal/vacuolar-type H+-ATPase subunit C (EC:3.6.3.14)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CJT4_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG49972.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
L1_007_365G1_scaffold_32_6
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5334..5654
-----------------
DNA (321bp)
protein (107aa)
Archaeal/vacuolar-type H+-ATPase subunit F (EC:3.6.3.14)
Uncharacterized protein n=2 Tax=Blautia RepID=R5C665_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX59061.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
L1_007_365G1_scaffold_32_7
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5675..7444
-----------------
DNA (1770bp)
protein (590aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Archaeal/vacuolar-type H+-ATPase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain n=1 Tax=Clostridium sp. D5 RepID=F0Z3D3_9CLOT
L1_007_365G1_scaffold_32_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7445..8815
-----------------
DNA (1371bp)
protein (457aa)
Archaeal/vacuolar-type H+-ATPase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZEW3_9CLOT
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L1_007_365G1_scaffold_32_9
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8834..9496
-----------------
DNA (663bp)
protein (221aa)
H(+)-transporting ATP synthase, vacuolar type, subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=1 Tax=Dorea longicatena CAG:42 RepID=R7FX90_9FIRM
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L1_007_365G1_scaffold_32_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9657..10766)
-----------------
DNA (1110bp)
protein (370aa)
Citrate transporter n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R4T4_CLOSW
citrate transporter
Citrate transporter {ECO:0000313|EMBL:ADL03268.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L1_007_365G1_scaffold_32_11
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10960..11385
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YEQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD55917.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L1_007_365G1_scaffold_32_12
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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11507..12022
-----------------
DNA (516bp)
protein (172aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G496_9FIRM
L1_007_365G1_scaffold_32_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12220..13512
-----------------
DNA (1293bp)
protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Clostridium RepID=B6FPL2_9CLOT
L1_007_365G1_scaffold_32_14
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13992..15179
-----------------
DNA (1188bp)
protein (396aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=2 Tax=Coprococcus RepID=C0B9X9_9FIRM
L1_007_365G1_scaffold_32_15
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15280..16437
-----------------
DNA (1158bp)
protein (386aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Coprococcus RepID=C0B9Y0_9FIRM
Signal transduction histidine kinase
L1_007_365G1_scaffold_32_16
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16430..17119
-----------------
DNA (690bp)
protein (230aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82449.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_365G1_scaffold_32_17
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17448..18413
-----------------
DNA (966bp)
protein (322aa)
Oligopeptide/dipeptide ABC transporter n=1 Tax=Clostridium ultunense Esp RepID=M1ZDA8_9CLOT
Oligopeptide/dipeptide ABC transporter {ECO:0000313|EMBL:CCQ96541.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
oligopeptide/dipeptide ABC transporter permease
L1_007_365G1_scaffold_32_18
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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18425..19273
-----------------
DNA (849bp)
protein (283aa)
Uncharacterized protein n=7 Tax=Treponema denticola RepID=M2AV19_TREDN
oligopeptide/dipeptide ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:EMD57407.1}; TaxID=999440 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola US-Trep.;"
L1_007_365G1_scaffold_32_19
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19274..20257
-----------------
DNA (984bp)
protein (328aa)
Oligopeptide transport ATP-binding protein OppD n=1 Tax=Clostridium ultunense Esp RepID=M1ZER6_9CLOT
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:CCQ96543.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
peptide ABC transporter ATP-binding protein
L1_007_365G1_scaffold_32_20
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20247..21239
-----------------
DNA (993bp)
protein (331aa)
Putative oligopeptide transport ATP-binding protein YkfD {ECO:0000313|EMBL:CCQ96544.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCQ96544.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
Putative oligopeptide transport ATP-binding protein YkfD n=1 Tax=Clostridium ultunense Esp RepID=M1ZE39_9CLOT
oligopeptide/dipeptide ABC transporter ATP-binding protein
L1_007_365G1_scaffold_32_21
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21262..22851
-----------------
DNA (1590bp)
protein (530aa)
Oligopeptide/dipeptide ABC transporter n=1 Tax=Clostridium ultunense Esp RepID=M1Z0Y9_9CLOT
Oligopeptide/dipeptide ABC transporter {ECO:0000313|EMBL:CCQ96545.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
peptide ABC transporter substrate-binding protein
L1_007_365G1_scaffold_32_22
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23004..24389
-----------------
DNA (1386bp)
protein (462aa)
Zinc carboxypeptidase n=1 Tax=Clostridium ultunense Esp RepID=M1ZDB2_9CLOT
Zinc carboxypeptidase {ECO:0000313|EMBL:CCQ96546.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
zinc carboxypeptidase
L1_007_365G1_scaffold_32_23
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24409..25293
-----------------
DNA (885bp)
protein (295aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YMR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD63420.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
RpiR family transcriptional regulator
L1_007_365G1_scaffold_32_24
unknown

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comp(25330..25449)
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

L1_007_365G1_scaffold_32_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25490..26140)
-----------------
DNA (651bp)
protein (217aa)
TrkA N-terminal domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1Z9_9FIRM
TrkA N-terminal domain protein {ECO:0000313|EMBL:EDM97669.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
K+ transport systems, NAD-binding component
L1_007_365G1_scaffold_32_26
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26177..27517)
-----------------
DNA (1341bp)
protein (447aa)
Potassium uptake protein, TrkH family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P200_9FIRM
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EDM97670.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Trk-type K+ transport systems, membrane components
L1_007_365G1_scaffold_32_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27783..30452
-----------------
DNA (2670bp)
protein (890aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
sensor protein KdpD (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AGZ3_9CLOT
L1_007_365G1_scaffold_32_28
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30445..31143
-----------------
DNA (699bp)
protein (233aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AC72_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CCX38632.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
XRE family transcriptional regulator
L1_007_365G1_scaffold_32_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31343..31441
-----------------
DNA (99bp)
protein (33aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A7J2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX38633.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L1_007_365G1_scaffold_32_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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31555..33330
-----------------
DNA (1776bp)
protein (592aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A9S5_9CLOT
Displaying items 1-30 of 188 in total

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