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L1_007_365G1_scaffold_90

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_90_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

213..1967
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BYA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55794.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative surface layer protein
L1_007_365G1_scaffold_90_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2037..2513)
DNA (477bp) protein (159aa)
Copper/zinc superoxide dismutase n=2 Tax=Clostridiales RepID=G9YX59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35444.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
superoxide dismutase copper/zinc binding protein
L1_007_365G1_scaffold_90_3
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2613..2801)
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=3 Tax=Clostridiales RepID=G9YX58_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
rpmB; 50S ribosomal protein L28
L1_007_365G1_scaffold_90_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2981..3937
DNA (957bp) protein (319aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hprK; HPr kinase/phosphorylase (EC:2.7.11.- 2.7.4.-)
HPr kinase/phosphorylase n=3 Tax=Clostridiales RepID=G9YX56_9FIRM
L1_007_365G1_scaffold_90_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4065..4565
DNA (501bp) protein (167aa)
Sigma-70 region 2 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55790.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ECF subfamily RNA polymerase sigma-24 subunit
L1_007_365G1_scaffold_90_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4546..5739
DNA (1194bp) protein (398aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7J6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35440.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L1_007_365G1_scaffold_90_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5954..6682
DNA (729bp) protein (243aa)
30S ribosomal protein S2 n=2 Tax=Clostridiales RepID=H1C7J5_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsB; 30S ribosomal protein S2
L1_007_365G1_scaffold_90_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6768..7682
DNA (915bp) protein (305aa)
Elongation factor Ts n=3 Tax=Clostridiales RepID=H1C7J4_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
tsf; elongation factor Ts
L1_007_365G1_scaffold_90_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8320..8880
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1C7J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35558.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
flavoredoxin
L1_007_365G1_scaffold_90_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8991..11189
DNA (2199bp) protein (733aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ATP-dependent DNA helicase UvrD/REP family protein (EC:3.6.1.-)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7J2_9FIRM
L1_007_365G1_scaffold_90_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11280..12002
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX47_9FIRM
L1_007_365G1_scaffold_90_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12004..12558
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYM1_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
frr; ribosome recycling factor
L1_007_365G1_scaffold_90_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12680..13387
DNA (708bp) protein (236aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Clostridiales RepID=G9YX45_9FIRM
L1_007_365G1_scaffold_90_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13388..14215
DNA (828bp) protein (276aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Phosphatidate cytidylyltransferase n=2 Tax=Clostridiales RepID=H1C7I8_9FIRM
cdsA; phosphatidate cytidylyltransferase
L1_007_365G1_scaffold_90_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14217..15380
DNA (1164bp) protein (388aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Clostridiales RepID=G9YX43_9FIRM
L1_007_365G1_scaffold_90_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15396..16472
DNA (1077bp) protein (359aa)
putative M50B family peptidase (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX42_9FIRM
RIP metalloprotease RseP {ECO:0000313|EMBL:EHM38014.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L1_007_365G1_scaffold_90_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16486..17523
DNA (1038bp) protein (346aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.4.3)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYL7_9CLOT
L1_007_365G1_scaffold_90_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17549..21709
DNA (4161bp) protein (1387aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
polC; PolC-type DNA polymerase I (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BJG4_9CLOT
L1_007_365G1_scaffold_90_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22022..22534
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative ferritin-1 n=3 Tax=Clostridiales RepID=G9YX38_9FIRM
Ferritin-like protein
L1_007_365G1_scaffold_90_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22609..23169)
DNA (561bp) protein (187aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35547.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative peptidoglycan-binding domain-containing protein
L1_007_365G1_scaffold_90_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23166..24386)
DNA (1221bp) protein (407aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35546.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
iron transporter FeoB
L1_007_365G1_scaffold_90_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24399..24788)
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35545.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
spore cortex-lytic enzyme pre-pro-form
L1_007_365G1_scaffold_90_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24957..25589
DNA (633bp) protein (211aa)
Redox-sensing transcriptional repressor Rex n=3 Tax=Clostridiales RepID=G9YX34_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rex; redox-sensing transcriptional repressor Rex
L1_007_365G1_scaffold_90_24
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25586..26731
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B2K0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72369.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative surface layer protein
L1_007_365G1_scaffold_90_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26850..27344
DNA (495bp) protein (165aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BKM3_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERI72368.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
transcriptional regulatory protein
L1_007_365G1_scaffold_90_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27376..29115
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CSY7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI72367.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_365G1_scaffold_90_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29108..30982
DNA (1875bp) protein (625aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYK8_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI72366.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_365G1_scaffold_90_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31370..32134
DNA (765bp) protein (255aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55766.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
4Fe-4S ferredoxin
L1_007_365G1_scaffold_90_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32386..33792)
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX27_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHM37999.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
multidrug resistance protein, MATE family
L1_007_365G1_scaffold_90_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34063..36045)
DNA (1983bp) protein (661aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B2X4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55764.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
integral membrane sensor signal transduction histidine kinase
Displaying items 1-30 of 140 in total

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