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L1_007_365G1_scaffold_168

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_168_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1534)
DNA (1533bp) protein (511aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEF4_9FIRM
L1_007_365G1_scaffold_168_2
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1843..2307)
DNA (465bp) protein (155aa)
YhcH/YjgK/YiaL family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETQ0_9FIRM
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:EEQ61394.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L1_007_365G1_scaffold_168_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2444..3286)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42743.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cell wall hydrolase SleB
L1_007_365G1_scaffold_168_4
unknown

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comp(3559..3798)
DNA (240bp) protein (80aa)

This feature has no annotations

L1_007_365G1_scaffold_168_5
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3795..4676)
DNA (882bp) protein (294aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Blautia sp. CAG:257 RepID=R5X9H3_9FIRM
L1_007_365G1_scaffold_168_6
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4696..5229)
DNA (534bp) protein (178aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL23099.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CBL23099.1};; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
Shikimate kinase n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LQP1_9FIRM
L1_007_365G1_scaffold_168_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5314..6114)
DNA (801bp) protein (267aa)
Electron transport complex RnfABCDGE type B subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5INF7_9CLOT
Electron transport complex RnfABCDGE type B subunit {ECO:0000313|EMBL:CCY41834.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
electron transport complex, RnfABCDGE type, B subunit
L1_007_365G1_scaffold_168_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6130..6705)
DNA (576bp) protein (192aa)
Electron transport complex RnfABCDGE type A subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IID5_9CLOT
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
electron transport complex, RnfABCDGE type, A subunit
L1_007_365G1_scaffold_168_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6719..7393)
DNA (675bp) protein (225aa)
Electron transport complex RnfABCDGE type E subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYN1_9CLOT
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
electron transport complex, RnfABCDGE type, E subunit
L1_007_365G1_scaffold_168_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7406..8014)
DNA (609bp) protein (203aa)
Predicted NADH:ubiquinone oxidoreductase subunit RnfG n=1 Tax=Clostridium sp. CAG:7 RepID=R5ING2_9CLOT
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG
L1_007_365G1_scaffold_168_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8011..8952)
DNA (942bp) protein (314aa)
Electron transport complex RnfABCDGE type D subunit n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYM4_9CLOT
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
electron transport complex, RnfABCDGE type, D subunit
L1_007_365G1_scaffold_168_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8968..10293)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5II49_9CLOT
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
RnfABCDGE type electron transport complex subunit C
L1_007_365G1_scaffold_168_13
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10696..11322)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKX6_9CLOT
Iron-sulfur flavoprotein {ECO:0000313|EMBL:KJJ68994.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
NADPH-dependent FMN reductase
L1_007_365G1_scaffold_168_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11346..14522)
DNA (3177bp) protein (1059aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5INH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41849.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
SNF2-like protein
L1_007_365G1_scaffold_168_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14550..16337)
DNA (1788bp) protein (596aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IIF0_9CLOT
L1_007_365G1_scaffold_168_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16465..17022)
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYN5_9CLOT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
translation elongation factor P (EF-P)
L1_007_365G1_scaffold_168_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17139..17660)
DNA (522bp) protein (174aa)
HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 n=1 Tax=Clostridium sp. CAG:7 RepID=R5II59_9CLOT
HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 {ECO:0000313|EMBL:CCY41853.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L1_007_365G1_scaffold_168_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17679..18131)
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium sp. CAG:7 RepID=R5INH9_9CLOT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-cone domain-containing protein
L1_007_365G1_scaffold_168_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18497..19255
DNA (759bp) protein (253aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
aroD; 3-dehydroquinate dehydratase AroD (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IIF7_9CLOT
L1_007_365G1_scaffold_168_20
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19514..19777)
DNA (264bp) protein (88aa)
Sporulation protein, YlmC/YmxH family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D308_9CLOT
Sporulation protein, YlmC/YmxH family {ECO:0000313|EMBL:EEG54288.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
YlmC/YmxH family sporulation protein
L1_007_365G1_scaffold_168_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19928..20830)
DNA (903bp) protein (301aa)
YaeC family lipoprotein n=4 Tax=Clostridium RepID=N9X814_9CLOT
YaeC family lipoprotein {ECO:0000313|EMBL:ENZ11456.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
NLPA lipoprotein
L1_007_365G1_scaffold_168_22
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20887..21552)
DNA (666bp) protein (222aa)
ABC transporter, permease protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D314_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEG54281.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
binding-protein-dependent transport system inner membrane protein
L1_007_365G1_scaffold_168_23
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21555..22604)
DNA (1050bp) protein (350aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETM4_9FIRM
ABC transporter
L1_007_365G1_scaffold_168_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23018..24421)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYQ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41857.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
dipeptidase
L1_007_365G1_scaffold_168_25
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24448..24900)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKW0_9CLOT
Yqey-like protein {ECO:0000313|EMBL:KJJ69010.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L1_007_365G1_scaffold_168_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24942..26546)
DNA (1605bp) protein (535aa)
Peptide chain release factor 3 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IIG3_9CLOT
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
peptide chain release factor 3
L1_007_365G1_scaffold_168_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26605..27807)
DNA (1203bp) protein (401aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic (EC:6.3.2.5)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41862.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L1_007_365G1_scaffold_168_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27904..28671
DNA (768bp) protein (256aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Type III pantothenate kinase n=1 Tax=Clostridium sp. CAG:7 RepID=R5II70_9CLOT
transcriptional activator, Baf family
L1_007_365G1_scaffold_168_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29084..29860
DNA (777bp) protein (259aa)
RNA polymerase sigma factor n=4 Tax=Clostridium bolteae RepID=A8RI17_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L1_007_365G1_scaffold_168_30
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29922..30701)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5FCE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY01284.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
aminoglycoside phosphotransferase
Displaying items 1-30 of 95 in total

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