ggKbase home page

L1_007_365G1_scaffold_269

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_269_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..223)
-----------------
DNA (222bp)
protein (74aa)
IS605 OrfB family transposase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD79_9FIRM
IS605 OrfB family transposase {ECO:0000313|EMBL:EES77128.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transposase, IS605 OrfB family, central region
L1_007_365G1_scaffold_269_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

388..1290
-----------------
DNA (903bp)
protein (301aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CFN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77039.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Transcriptional regulator
L1_007_365G1_scaffold_269_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1330..3447)
-----------------
DNA (2118bp)
protein (706aa)
Sulfate permease n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG58_9FIRM
Sulfate permease {ECO:0000313|EMBL:EES76037.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L1_007_365G1_scaffold_269_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3467..3940)
-----------------
DNA (474bp)
protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76036.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
conserved hypothetical protein, ribA/ribD-fused
L1_007_365G1_scaffold_269_5
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4627..5295)
-----------------
DNA (669bp)
protein (223aa)
Uncharacterized protein n=3 Tax=Acidaminococcus RepID=G4Q6A8_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ22209.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L1_007_365G1_scaffold_269_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5292..5546)
-----------------
DNA (255bp)
protein (85aa)
CRISPR-associated protein, Cas2 family n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3T7_9FIRM
CRISPR-associated protein, Cas2 family
CRISPR-associated protein, Cas2 family {ECO:0000313|EMBL:CBK90077.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_365G1_scaffold_269_7
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5643..9719)
-----------------
DNA (4077bp)
protein (1359aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Crispr-associated protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TGN6_9FIRM
crispr-associated protein
L1_007_365G1_scaffold_269_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10172..12109)
-----------------
DNA (1938bp)
protein (646aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76035.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
L1_007_365G1_scaffold_269_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12203..13072)
-----------------
DNA (870bp)
protein (290aa)
DegV family protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNM0_9FIRM
DegV family protein {ECO:0000313|EMBL:CDD79834.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
EDD domain protein, DegV family
L1_007_365G1_scaffold_269_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13297..14487)
-----------------
DNA (1191bp)
protein (397aa)
C-terminal peptidase (prc) (EC:3.4.21.102)
Carboxyl-terminal protease n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQW6_9FIRM
Carboxyl-terminal protease {ECO:0000313|EMBL:CDD79833.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_007_365G1_scaffold_269_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14567..15472)
-----------------
DNA (906bp)
protein (302aa)
Cell division protein FtsX n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQA5_9FIRM
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
cell division protein FtsX
L1_007_365G1_scaffold_269_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15462..16145)
-----------------
DNA (684bp)
protein (228aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79831.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
cell division ATP-binding protein FtsE
L1_007_365G1_scaffold_269_13
unknown

Not on your lists

comp(16324..16416)
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

L1_007_365G1_scaffold_269_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16444..17532)
-----------------
DNA (1089bp)
protein (363aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79830.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
transcriptional regulator, CdaR family
L1_007_365G1_scaffold_269_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17679..18551)
-----------------
DNA (873bp)
protein (291aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79829.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_007_365G1_scaffold_269_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18710..19075)
-----------------
DNA (366bp)
protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76028.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Coenzyme PQQ synthesis protein D (PqqD).
L1_007_365G1_scaffold_269_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19100..20998)
-----------------
DNA (1899bp)
protein (633aa)
OPT family oligopeptide transporter n=2 Tax=Ruminococcus RepID=C6JG48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79826.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
putative oligopeptide transporter, OPT family
L1_007_365G1_scaffold_269_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21177..22976)
-----------------
DNA (1800bp)
protein (600aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JG47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76026.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Nitric oxide reductase activation protein
L1_007_365G1_scaffold_269_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22960..23880)
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76025.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
MoxR-like ATPases
L1_007_365G1_scaffold_269_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23997..26117)
-----------------
DNA (2121bp)
protein (707aa)
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76024.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_007_365G1_scaffold_269_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26119..27069)
-----------------
DNA (951bp)
protein (317aa)
YegS//BmrU family lipid kinase n=2 Tax=Ruminococcus RepID=C6JG44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79819.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L1_007_365G1_scaffold_269_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27516..28310
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79001.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_007_365G1_scaffold_269_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28573..29352)
-----------------
DNA (780bp)
protein (260aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CM19_9FIRM
L1_007_365G1_scaffold_269_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29345..30529)
-----------------
DNA (1185bp)
protein (395aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
tryptophan synthase, beta subunit (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CL84_9FIRM
L1_007_365G1_scaffold_269_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30592..31230)
-----------------
DNA (639bp)
protein (213aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG39_9FIRM
L1_007_365G1_scaffold_269_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31261..32100)
-----------------
DNA (840bp)
protein (280aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CMM7_9FIRM
L1_007_365G1_scaffold_269_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32161..33171)
-----------------
DNA (1011bp)
protein (337aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLV0_9FIRM
L1_007_365G1_scaffold_269_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33164..33742)
-----------------
DNA (579bp)
protein (193aa)
anthranilate synthase, component II (EC:4.1.3.27)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CM14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78995.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L1_007_365G1_scaffold_269_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33739..35328)
-----------------
DNA (1590bp)
protein (530aa)
anthranilate synthase, component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG35_9FIRM
Anthranilate synthase component I {ECO:0000313|EMBL:EES76014.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L1_007_365G1_scaffold_269_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35853..37313)
-----------------
DNA (1461bp)
protein (487aa)
Uracil-xanthine permease n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JG34_9FIRM
Uracil-xanthine permease {ECO:0000313|EMBL:EES76013.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
uracil-xanthine permease
Displaying items 1-30 of 91 in total

View Taxonomy