ggKbase home page

L1_007_365G1_scaffold_340

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_340_1
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

440..1078
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FL42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB02782.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
L1_007_365G1_scaffold_340_2
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1093..4224
DNA (3132bp) protein (1044aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BT20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA62291.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
type I restriction-modification system restriction subunit
L1_007_365G1_scaffold_340_3
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4397..6325
DNA (1929bp) protein (643aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYJ4_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98091.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_4
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6335..7387
DNA (1053bp) protein (351aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYJ3_ROSHA
methyltransferase
L1_007_365G1_scaffold_340_5
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7751..8962
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B5B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91411.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
LacI family transcriptional regulator
L1_007_365G1_scaffold_340_6
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9086..10033
DNA (948bp) protein (316aa)
Branched-chain amino acid ABC transporter permease protein n=2 Tax=Coprococcus RepID=R6MI39_9FIRM
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:CDB85547.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
ABC transporter permease
L1_007_365G1_scaffold_340_7
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10051..11550
DNA (1500bp) protein (500aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B008_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD54652.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family
L1_007_365G1_scaffold_340_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11561..12532
DNA (972bp) protein (324aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7A1J9_9CLOT
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:CDD54653.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
ABC transporter permease
L1_007_365G1_scaffold_340_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12596..13705
DNA (1110bp) protein (370aa)
Transcriptional regulator GntR family n=1 Tax=Roseburia sp. CAG:18 RepID=R5VFG7_9FIRM
Transcriptional regulator GntR family {ECO:0000313|EMBL:CCZ79462.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
araR; AraR
L1_007_365G1_scaffold_340_10
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13871..14854
DNA (984bp) protein (328aa)
Penicillin V acylase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYJ2_ROSHA
penicillin V acylase
Penicillin V acylase {ECO:0000313|EMBL:AEN98089.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_11
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14851..15702)
DNA (852bp) protein (284aa)
DegV family protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYJ1_ROSHA
degV family protein
DegV family protein {ECO:0000313|EMBL:AEN98088.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_12
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15721..16182)
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYJ0_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98087.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_13

Not on your lists

16542..17012
DNA (471bp) protein (157aa)
GNAT family N-acetyltransferase n=1 Tax=human gut metagenome RepID=K1T1G9_9ZZZZ
GNAT family N-acetyltransferase {ECO:0000313|EMBL:EKC66727.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_365G1_scaffold_340_14
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17034..17414
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYI8_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98085.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_15
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17449..17718
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYI7_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98084.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_16
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17702..18103
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6U2U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC74411.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
nucleotidyltransferase substrate binding protein, HI0074 family
L1_007_365G1_scaffold_340_17
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18191..19360
DNA (1170bp) protein (390aa)
Major facilitator transporter n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2SYI5_ROSHA
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:AEN98082.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_18
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19419..19601
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T5_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98081.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_19
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20242..21933)
DNA (1692bp) protein (564aa)
Carbon starvation protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T4_ROSHA
Carbon starvation protein {ECO:0000313|EMBL:AEN98080.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
carbon starvation protein
L1_007_365G1_scaffold_340_20
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22446..23102
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T3_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98079.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_21
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23278..24480
DNA (1203bp) protein (401aa)
Aminotransferase class I and II n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T2_ROSHA
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:AEN98078.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_22
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24596..25036
DNA (441bp) protein (147aa)
Response regulator receiver protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T1_ROSHA
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AEN98077.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_23
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25033..25512
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5T0_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98076.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_24
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25612..26553
DNA (942bp) protein (314aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Cysteine synthase A n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S9_ROSHA
cysteine synthase A
L1_007_365G1_scaffold_340_25
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26881..27804
DNA (924bp) protein (308aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Quinolinate synthetase complex, subunit alpha n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S7_ROSHA
quinolinate synthetase complex subunit alpha
L1_007_365G1_scaffold_340_26
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27865..28620
DNA (756bp) protein (252aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S6_ROSHA
UBA/THIF-type NAD/FAD binding protein
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:AEN98072.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_27
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28637..29803
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S5_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98071.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_28
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29920..30267
DNA (348bp) protein (116aa)
Family 5 extracellular solute-binding protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S4_ROSHA
family 5 extracellular solute-binding protein
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:AEN98070.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_29
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30271..31599
DNA (1329bp) protein (443aa)
Family 5 extracellular solute-binding protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S4_ROSHA
family 5 extracellular solute-binding protein
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:AEN98070.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_365G1_scaffold_340_30
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31611..32609
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5S3_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98069.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Displaying items 1-30 of 65 in total

View Taxonomy