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L1_007_365G1_scaffold_449

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_449_1
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..454
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R730_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF46692.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L1_007_365G1_scaffold_449_2
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

485..1585
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R9H6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF46693.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L1_007_365G1_scaffold_449_3
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1661..1990)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R7J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF46694.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L1_007_365G1_scaffold_449_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2241..2420)
DNA (180bp) protein (60aa)
Aldo/keto reductases related to diketogulonate reductase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG46_9FIRM
Aldo/keto reductases related to diketogulonate reductase {ECO:0000313|EMBL:CCZ79727.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Aldo/keto reductases, related to diketogulonate reductase
L1_007_365G1_scaffold_449_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2466..2762)
DNA (297bp) protein (99aa)
Carboxymuconolactone decarboxylase family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN65_9FIRM
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:CCZ79728.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
L1_007_365G1_scaffold_449_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2799..3248)
DNA (450bp) protein (150aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVG9_9FIRM
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:CCZ79729.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cupin
L1_007_365G1_scaffold_449_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3373..4269
DNA (897bp) protein (299aa)
Transcription regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNU0_9FIRM
Transcription regulator {ECO:0000313|EMBL:CCZ79730.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
LysR family transcriptional regulator
L1_007_365G1_scaffold_449_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4409..6013
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8G3_9FIRM
L1_007_365G1_scaffold_449_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6115..6462)
DNA (348bp) protein (116aa)
Nitrogen regulatory protein P-II n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG51_9FIRM
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCZ79732.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nitrogen regulatory protein P-II
L1_007_365G1_scaffold_449_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6570..7814)
DNA (1245bp) protein (415aa)
Ammonium transporter n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN67_9FIRM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ammonium transporter
L1_007_365G1_scaffold_449_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8006..8653)
DNA (648bp) protein (216aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVH4_9FIRM
Thiamine diphosphokinase {ECO:0000313|EMBL:CCZ79734.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_449_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8657..9316)
DNA (660bp) protein (220aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNU4_9FIRM
ribulose-phosphate 3-epimerase
L1_007_365G1_scaffold_449_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9326..10204)
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8G9_9FIRM
GTPase
L1_007_365G1_scaffold_449_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10212..12317)
DNA (2106bp) protein (702aa)
Protein kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG55_9FIRM
Protein kinase {ECO:0000313|EMBL:CCZ79737.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
protein kinase
L1_007_365G1_scaffold_449_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12330..13058)
DNA (729bp) protein (243aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Protein serine/threonine phosphatase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN72_9FIRM
Protein serine/threonine phosphatase {ECO:0000313|EMBL:CCZ79738.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_449_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13135..14184)
DNA (1050bp) protein (350aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVI1_9FIRM
L1_007_365G1_scaffold_449_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14189..15472)
DNA (1284bp) protein (428aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNU7_9FIRM
L1_007_365G1_scaffold_449_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15462..16166)
DNA (705bp) protein (235aa)
Putative Zn-dependent protease n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8H4_9FIRM
Putative Zn-dependent protease {ECO:0000313|EMBL:CCZ79741.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative Zn-dependent protease
L1_007_365G1_scaffold_449_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16182..17114)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Methionyl-tRNA formyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG59_9FIRM
methionyl-tRNA formyltransferase
L1_007_365G1_scaffold_449_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17116..17601)
DNA (486bp) protein (162aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN77_9FIRM
L1_007_365G1_scaffold_449_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17611..19842)
DNA (2232bp) protein (744aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Replication restart DNA helicase PriA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVI7_9FIRM
L1_007_365G1_scaffold_449_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19845..21350)
DNA (1506bp) protein (502aa)
Porphobilinogen deaminase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNV1_9FIRM
Porphobilinogen deaminase {ECO:0000313|EMBL:CCZ79745.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
porphobilinogen deaminase
L1_007_365G1_scaffold_449_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21481..22365)
DNA (885bp) protein (295aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Porphobilinogen deaminase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8H8_9FIRM
porphobilinogen deaminase
L1_007_365G1_scaffold_449_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22377..23627)
DNA (1251bp) protein (417aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG64_9FIRM
L1_007_365G1_scaffold_449_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23624..24898)
DNA (1275bp) protein (425aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN80_9FIRM
glutamate-1-semialdehyde 2,1-aminomutase
L1_007_365G1_scaffold_449_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24900..25871)
DNA (972bp) protein (324aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVJ2_9FIRM
Delta-aminolevulinic acid dehydratase {ECO:0000313|EMBL:CCZ79749.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_449_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25892..26521)
DNA (630bp) protein (210aa)
Siroheme synthase domain-containing protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNV4_9FIRM
Siroheme synthase domain-containing protein {ECO:0000313|EMBL:CCZ79750.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
siroheme synthase, N-terminal domain
L1_007_365G1_scaffold_449_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26621..27025
DNA (405bp) protein (135aa)
Predicted membrane protein n=2 Tax=root RepID=R5V8I2_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ79751.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L1_007_365G1_scaffold_449_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27039..27491)
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=root RepID=R5VG71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79752.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Aspartate carbamoyltransferase, regulatory subunit
L1_007_365G1_scaffold_449_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27494..28414)
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN83_9FIRM
Displaying items 1-30 of 79 in total

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