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L1_007_365G1_scaffold_472

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_472_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16..453)
DNA (438bp) protein (146aa)
50S ribosomal protein L16 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQJ3_9CLOT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
LSU ribosomal protein L16P
L1_007_365G1_scaffold_472_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(453..1109)
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IVY0_9CLOT
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
30S ribosomal protein S3
L1_007_365G1_scaffold_472_3
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1119..1505)
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=17 Tax=Clostridium RepID=A8S1F9_9CLOT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
50S ribosomal protein L22
L1_007_365G1_scaffold_472_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1539..1823)
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=18 Tax=Clostridium RepID=A8S1G0_9CLOT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
30S ribosomal protein S19
L1_007_365G1_scaffold_472_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1843..2688)
DNA (846bp) protein (282aa)
50S ribosomal protein L2 n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6H8_9CLOT
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
LSU ribosomal protein L2P
L1_007_365G1_scaffold_472_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2800..3099)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQJ8_9CLOT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
50S ribosomal protein L25
L1_007_365G1_scaffold_472_7
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3099..3719)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=3 Tax=Clostridium RepID=G5I2R2_9CLOT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
LSU ribosomal protein L4P
L1_007_365G1_scaffold_472_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3748..4383)
DNA (636bp) protein (212aa)
50S ribosomal protein L3 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQU3_9CLOT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
50S ribosomal protein L3, bacterial
L1_007_365G1_scaffold_472_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4568..4885)
DNA (318bp) protein (106aa)
30S ribosomal protein S10 n=19 Tax=Clostridiales RepID=A8S1G6_9CLOT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
SSU ribosomal protein S10P
L1_007_365G1_scaffold_472_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5379..6749)
DNA (1371bp) protein (457aa)
Argininosuccinate lyase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6K6_9CLOT
Argininosuccinate lyase {ECO:0000313|EMBL:CCY44497.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cell wall binding repeat-containing protein
L1_007_365G1_scaffold_472_11
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

comp(6975..8447)
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XDH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA13613.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_007_365G1_scaffold_472_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8875..9735
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW22_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44504.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Predicted SAM-dependent methyltransferases
L1_007_365G1_scaffold_472_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9813..10703)
DNA (891bp) protein (297aa)
Peptidase n=3 Tax=Clostridium RepID=N9X3Q4_9CLOT
Peptidase {ECO:0000313|EMBL:ENZ09775.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Subtilisin-like serine proteases
L1_007_365G1_scaffold_472_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11009..11623)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J678_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44506.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
HAD-superfamily hydrolase
L1_007_365G1_scaffold_472_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11836..12114)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6M1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44507.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
protein translocase subunit yajC
L1_007_365G1_scaffold_472_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12167..13303)
DNA (1137bp) protein (379aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQQ0_9CLOT
L1_007_365G1_scaffold_472_17
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13307..14704)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW26_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44509.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
radical SAM protein
L1_007_365G1_scaffold_472_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14829..14975)
DNA (147bp) protein (49aa)
RSAM-modified six-cysteine peptide n=18 Tax=Clostridiales RepID=C5EVK4_9FIRM
Six-cysteine peptide SCIFF {ECO:0000313|EMBL:ENZ61726.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_365G1_scaffold_472_19
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15265..15627
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JEQ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61258.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L1_007_365G1_scaffold_472_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15657..16127)
DNA (471bp) protein (157aa)
Lipoprotein signal peptidase {ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|SAAS:SAAS00112508};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Lipoprotein signal peptidase (EC:3.4.23.36)
Peptidase A8 signal peptidase II n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6M5_9CLOT
L1_007_365G1_scaffold_472_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16348..18096
DNA (1749bp) protein (583aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQQ5_9CLOT
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:CCY44513.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Subtilase family.
L1_007_365G1_scaffold_472_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18120..19511)
DNA (1392bp) protein (464aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW28_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000313|EMBL:CCY44514.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L1_007_365G1_scaffold_472_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19628..20959)
DNA (1332bp) protein (444aa)
Peptidase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9X394_9CLOT
Peptidase {ECO:0000313|EMBL:ENZ09786.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_007_365G1_scaffold_472_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21135..23189)
DNA (2055bp) protein (685aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J687_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44516.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cell envelope-related function transcriptional attenuator common domain
L1_007_365G1_scaffold_472_25
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23208..24632)
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6M8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44517.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Undecaprenyl-phosphate glucose phosphotransferase
L1_007_365G1_scaffold_472_26
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24875..25864)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JHZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62468.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
family 2 glycosyl transferase
L1_007_365G1_scaffold_472_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25861..28083)
DNA (2223bp) protein (741aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44519.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Predicted glycosyltransferases
L1_007_365G1_scaffold_472_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28089..29051)
DNA (963bp) protein (321aa)
Glycosyltransferases involved in cell wall biogenesis (EC:2.4.1.83)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR02_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44520.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L1_007_365G1_scaffold_472_29
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29070..30002)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J691_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44521.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
NAD-dependent epimerase/dehydratase
L1_007_365G1_scaffold_472_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30012..31145)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6N2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44522.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
C-methyltransferase
Displaying items 1-30 of 49 in total

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