ggKbase home page

L1_007_365G1_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_564_1
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(273..2003)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6ANI3_9PORP
2',3'-cyclic-nucleotide 2'-phosphodiesterase {ECO:0000313|EMBL:KEJ84043.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
2', 3'-cyclic nucleotide 2'-phosphodiesterase
L1_007_365G1_scaffold_564_2
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2022..4448)
DNA (2427bp) protein (809aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6ANZ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84042.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
glycoside hydrolase
L1_007_365G1_scaffold_564_3
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4570..5358)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6ABC4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84041.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
ferredoxin iron-sulfur protein
L1_007_365G1_scaffold_564_4
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5364..5939)
DNA (576bp) protein (192aa)
Redoxin family protein n=5 Tax=Bacteroidales RepID=C7XD69_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84040.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L1_007_365G1_scaffold_564_5
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6087..6668)
DNA (582bp) protein (194aa)
indolepyruvate oxidoreductase subunit beta (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase, beta subunit n=2 Tax=Parabacteroides RepID=K5ZEM1_9PORP
Indolepyruvate oxidoreductase subunit IorB {ECO:0000313|EMBL:CDB49154.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L1_007_365G1_scaffold_564_6
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6665..8266)
DNA (1602bp) protein (534aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
Indolepyruvate ferredoxin oxidoreductase, alpha subunit n=2 Tax=Parabacteroides RepID=K6ANI0_9PORP
indolepyruvate oxidoreductase subunit IorA
L1_007_365G1_scaffold_564_7
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8371..9420)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=5 Tax=Parabacteroides RepID=A6LCX7_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR43541.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L1_007_365G1_scaffold_564_8
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9786..10403
DNA (618bp) protein (206aa)
Serine type site-specific recombinase Mpi n=5 Tax=Bacteroidales RepID=A6LCX8_PARD8
serine type site-specific recombinase Mpi
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEU50765.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L1_007_365G1_scaffold_564_9
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10466..12526)
DNA (2061bp) protein (687aa)
Acetyl-CoA synthetase n=9 Tax=Bacteroidales RepID=A6LCX9_PARD8
CoA binding domain protein {ECO:0000313|EMBL:EEU50764.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
acetyl-CoA synthetase
L1_007_365G1_scaffold_564_10
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12606..13358)
DNA (753bp) protein (251aa)
Hydrogenase accessory protein HypB n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K5ZEL9_9PORP
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:EKN25292.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
hydrogenase nickel incorporation protein HypB
L1_007_365G1_scaffold_564_11
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13388..13735)
DNA (348bp) protein (116aa)
Probable hydrogenase nickel incorporation protein HypA n=6 Tax=Parabacteroides RepID=HYPA_PARD8
hydrogenase expression/formation protein HupA
Probable hydrogenase nickel incorporation protein HypA {ECO:0000256|HAMAP-Rule:MF_00213}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L1_007_365G1_scaffold_564_12
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13748..16030)
DNA (2283bp) protein (761aa)
Hydrogenase maturation factor n=5 Tax=Parabacteroides RepID=A6LCY2_PARD8
Hydrogenase maturation factor {ECO:0000313|EMBL:ABR43546.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
hydrogenase maturation factor
L1_007_365G1_scaffold_564_13
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16190..16423
DNA (234bp) protein (78aa)
Hydrogenase assembly chaperone HypC/HupF n=2 Tax=Parabacteroides RepID=K6ABB6_9PORP
Hydrogenase expression/formation protein HypC {ECO:0000313|EMBL:CDB49162.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hydrogenase expression/formation protein HypC
L1_007_365G1_scaffold_564_14
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16411..17490
DNA (1080bp) protein (360aa)
Hydrogenase isoenzymes formation protein HypD n=3 Tax=Parabacteroides RepID=A6LCY4_PARD8
hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:KDS73336.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L1_007_365G1_scaffold_564_15
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17497..18546
DNA (1050bp) protein (350aa)
Hydrogenase expression/formation protein HypE n=3 Tax=Parabacteroides RepID=A6LCY5_PARD8
hydrogenase expression/formation protein HypE
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:ABR43549.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L1_007_365G1_scaffold_564_16
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18566..19663
DNA (1098bp) protein (366aa)
Hydrogenase (NiFe) small subunit (HydA) n=5 Tax=Bacteroidales RepID=K6ANH2_9PORP
uptake hydrogenase small subunit
Putative hydrogenase-2 small chain {ECO:0000313|EMBL:EEY82094.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
L1_007_365G1_scaffold_564_17
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19679..21400
DNA (1722bp) protein (574aa)
Membrane-bound hydrogenase 1 large subunit {ECO:0000313|EMBL:EEY82095.1}; EC=1.12.99.6 {ECO:0000313|EMBL:EEY82095.1};; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
Stable NiFe hydrogenase large subunit n=6 Tax=Bacteroidales RepID=A6LCY7_PARD8
stable NiFe hydrogenase large subunit
L1_007_365G1_scaffold_564_18
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21415..22152
DNA (738bp) protein (246aa)
NiFe hydrogenase small subunit, HupC n=5 Tax=Bacteroidales RepID=A6LCY8_PARD8
NiFe hydrogenase small subunit, HupC
NiFe hydrogenase small subunit, HupC {ECO:0000313|EMBL:ABR43552.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L1_007_365G1_scaffold_564_19
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22149..22628
DNA (480bp) protein (160aa)
Ni,Fe-hydrogenase maturation factor n=4 Tax=Bacteroidales RepID=A6LCY9_PARD8
Ni,Fe-hydrogenase maturation factor
Ni,Fe-hydrogenase maturation factor {ECO:0000313|EMBL:ABR43553.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L1_007_365G1_scaffold_564_20
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22594..23331)
DNA (738bp) protein (246aa)
Glycerol uptake facilitator protein n=8 Tax=Bacteroidales RepID=A6LCZ0_PARD8
glycerol uptake facilitator protein
MIP channel s family protein {ECO:0000313|EMBL:KDS73342.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L1_007_365G1_scaffold_564_21
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23388..24887)
DNA (1500bp) protein (500aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
Glycerol kinase n=4 Tax=Bacteroidales RepID=GLPK_PARD8
glycerol kinase
L1_007_365G1_scaffold_564_22
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24920..26485)
DNA (1566bp) protein (522aa)
FAD-dependent glycerol-3-phosphate dehydrogenase subunit n=3 Tax=Bacteroidales RepID=D7IST3_9BACE
FAD binding domain protein {ECO:0000313|EMBL:KDS73344.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
glycerol-3-phosphate dehydrogenase
L1_007_365G1_scaffold_564_23
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26716..29061)
DNA (2346bp) protein (782aa)
Glycosyltransferase family 51, candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase n=6 Tax=Bacteroidales RepID=A6LCZ3_PARD8
bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase
Glycosyltransferase family 51 candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase {ECO:0000313|EMBL:CDB49172.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L1_007_365G1_scaffold_564_24
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29148..30203)
DNA (1056bp) protein (352aa)
Membrane protein n=3 Tax=Bacteroidales RepID=D7IST1_9BACE
transmembrane protein
Membrane protein {ECO:0000313|EMBL:EFI09008.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L1_007_365G1_scaffold_564_25
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30313..31200)
DNA (888bp) protein (296aa)
LysR substrate binding domain protein n=4 Tax=Bacteroidales RepID=C7XD48_9PORP
transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI09007.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L1_007_365G1_scaffold_564_26
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31288..32211
DNA (924bp) protein (308aa)
Uncharacterized protein n=4 Tax=Bacteroidales RepID=A6LCZ6_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR43560.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L1_007_365G1_scaffold_564_27
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32220..33017
DNA (798bp) protein (266aa)
Peptidase n=3 Tax=Bacteroidales RepID=A6LCZ7_PARD8
peptidase
Uncharacterized protein {ECO:0000313|EMBL:EKN25275.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
L1_007_365G1_scaffold_564_28
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33229..33495
DNA (267bp) protein (89aa)
Two-component system sensor histidine kinase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7ISS7_9BACE
Two-component system sensor histidine kinase {ECO:0000313|EMBL:EFI09004.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L1_007_365G1_scaffold_564_29
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33440..34078
DNA (639bp) protein (213aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
Two-component system histidine kinase n=2 Tax=Bacteroidales RepID=D7ISS6_9BACE
two-component regulator sensor kinase
L1_007_365G1_scaffold_564_30
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34151..34792
DNA (642bp) protein (214aa)
Uncharacterized protein n=5 Tax=Bacteroidales RepID=A6LCZ9_PARD8
hypothetical protein
Bifunctional nuclease family protein {ECO:0000313|EMBL:KDS73351.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
Displaying items 1-30 of 39 in total

View Taxonomy