ggKbase home page

L1_007_365G1_scaffold_587

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_587_1
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2..295
-----------------
DNA (294bp)
protein (98aa)
Resolvase, N-terminal domain protein n=2 Tax=Firmicutes RepID=D4CAH2_9CLOT
Site-specific recombinases, DNA invertase Pin homologs
Recombinase {ECO:0000313|EMBL:EFY04016.1}; Flags: Fragment;; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
L1_007_365G1_scaffold_587_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

652..981
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78616.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_587_3
unknown

Not on your lists

comp(1355..1879)
-----------------
DNA (525bp)
protein (175aa)

This feature has no annotations

L1_007_365G1_scaffold_587_4
unknown

Not on your lists

comp(1935..2474)
-----------------
DNA (540bp)
protein (180aa)

This feature has no annotations

L1_007_365G1_scaffold_587_5
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2947..4197)
-----------------
DNA (1251bp)
protein (417aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AUZ5_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC56036.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
hypothetical protein
L1_007_365G1_scaffold_587_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4190..4918)
-----------------
DNA (729bp)
protein (243aa)
Response regulator of the LytR/AlgR family n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E587_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBK90577.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_365G1_scaffold_587_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5075..7543)
-----------------
DNA (2469bp)
protein (823aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBE4_9FIRM
L1_007_365G1_scaffold_587_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7578..10745)
-----------------
DNA (3168bp)
protein (1056aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Isoleucine--tRNA ligase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZGL8_EUBR3
ileS; isoleucyl-tRNA synthetase
L1_007_365G1_scaffold_587_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11072..12004)
-----------------
DNA (933bp)
protein (311aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78011.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12017..12883)
-----------------
DNA (867bp)
protein (289aa)
Predicted membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBE9_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ78012.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L1_007_365G1_scaffold_587_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13261..14745)
-----------------
DNA (1485bp)
protein (495aa)
L-fucose isomerase and related proteins n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIE4_9FIRM
L-fucose isomerase and related proteins {ECO:0000313|EMBL:CCZ78013.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L-fucose isomerase and related proteins
L1_007_365G1_scaffold_587_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14807..16333)
-----------------
DNA (1527bp)
protein (509aa)
xylulokinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQJ5_9FIRM
Xylulokinase {ECO:0000313|EMBL:CCZ78014.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16557..17570
-----------------
DNA (1014bp)
protein (338aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78015.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcriptional regulators
L1_007_365G1_scaffold_587_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17599..18195)
-----------------
DNA (597bp)
protein (199aa)
Putative acetyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3Q5_9FIRM
Putative acetyltransferase {ECO:0000313|EMBL:CCZ78016.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_587_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18257..18814)
-----------------
DNA (558bp)
protein (186aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78017.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_587_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18834..19694)
-----------------
DNA (861bp)
protein (287aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIE9_9FIRM
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:CCZ78018.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19723..21123)
-----------------
DNA (1401bp)
protein (467aa)
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQK1_9FIRM
L-aspartate oxidase {ECO:0000313|EMBL:CCZ78019.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_18
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21169..22182)
-----------------
DNA (1014bp)
protein (338aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EEG95596.1}; EC=2.4.-.- {ECO:0000313|EMBL:EEG95596.1};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
glycosyl transferase n=1 Tax=Lachnobacterium bovis RepID=UPI0003B4EB42
glycosyltransferase
L1_007_365G1_scaffold_587_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22508..23593)
-----------------
DNA (1086bp)
protein (362aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3R6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78031.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
A/G-specific DNA glycosylase
L1_007_365G1_scaffold_587_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23600..24907)
-----------------
DNA (1308bp)
protein (436aa)
Cyclomaltodextrinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBF9_9FIRM
Cyclomaltodextrinase {ECO:0000313|EMBL:CCZ78032.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
cyclomaltodextrinase
L1_007_365G1_scaffold_587_21

Not on your lists

comp(24948..25133)
-----------------
DNA (186bp)
protein (62aa)
Phage shock protein C, PspC n=1 Tax=human gut metagenome RepID=K1S7D3_9ZZZZ
Phage shock protein C, PspC {ECO:0000313|EMBL:EKC49610.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Putative stress-responsive transcriptional regulator
L1_007_365G1_scaffold_587_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25368..27857
-----------------
DNA (2490bp)
protein (830aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQL1_9FIRM
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CCZ78034.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27989..29998)
-----------------
DNA (2010bp)
protein (670aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ66_9FIRM
L1_007_365G1_scaffold_587_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30190..30993
-----------------
DNA (804bp)
protein (268aa)
Transcriptional regulator AraC family n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3S0_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ78036.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
AraC-type DNA-binding domain-containing proteins
L1_007_365G1_scaffold_587_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31023..31463)
-----------------
DNA (441bp)
protein (147aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78037.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_587_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31463..31924)
-----------------
DNA (462bp)
protein (154aa)
PF08006 domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIG6_9FIRM
PF08006 domain protein {ECO:0000313|EMBL:CCZ78038.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_587_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31926..32276)
-----------------
DNA (351bp)
protein (117aa)
Putative PadR family transcriptional regulator n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQL6_9FIRM
Putative PadR family transcriptional regulator {ECO:0000313|EMBL:CCZ78039.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative PadR family transcriptional regulator
L1_007_365G1_scaffold_587_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32405..34246)
-----------------
DNA (1842bp)
protein (614aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ70_9FIRM
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CCZ78040.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
lipopolysaccharide biosynthesis glycosyltransferase
L1_007_365G1_scaffold_587_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34261..35097)
-----------------
DNA (837bp)
protein (279aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3S3_9FIRM
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CCZ78041.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glycosyl transferase family protein
L1_007_365G1_scaffold_587_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35094..35930)
-----------------
DNA (837bp)
protein (279aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBG6_9FIRM
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:CCZ78042.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phospholipid/glycerol acyltransferase
Displaying items 1-30 of 42 in total

View Taxonomy