ggKbase home page

L1_007_365G1_scaffold_597

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_597_1
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1118)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=A8RQU0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP16912.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
transcriptional regulator, LacI family
L1_007_365G1_scaffold_597_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1382..3622
DNA (2241bp) protein (747aa)
PTS system, IIBC component n=6 Tax=Clostridium clostridioforme RepID=N9XKX7_9CLOT
PTS system, IIBC component {ECO:0000313|EMBL:ENZ66327.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
PTS system maltose-specific IIA component, Glc family (TC 4.A.1.1.11)/PTS system maltose-specific IIB component, Glc family (TC 4.A.1.1.11)/PTS system maltose-specific IIC component, Glc family (TC 4.A.1.1.11)
L1_007_365G1_scaffold_597_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3689..4561
DNA (873bp) protein (291aa)
Exodeoxyribonuclease III n=8 Tax=Clostridium RepID=N9WSZ0_9CLOT
Exodeoxyribonuclease III {ECO:0000313|EMBL:ENZ66326.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Metal-dependent hydrolase
L1_007_365G1_scaffold_597_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4600..6099
DNA (1500bp) protein (500aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=8 Tax=Clostridium clostridioforme RepID=G5I0A1_9CLOT
L1_007_365G1_scaffold_597_5
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6202..6984)
DNA (783bp) protein (261aa)
N-acetylmuramoyl-L-alanine amidase n=9 Tax=Clostridium RepID=N9W0E7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23360.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
cell wall hydrolase/autolysin
L1_007_365G1_scaffold_597_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7206..8426)
DNA (1221bp) protein (407aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
LL-diaminopimelate aminotransferase n=8 Tax=Clostridium RepID=N9VZY0_9CLOT
LL-diaminopimelate aminotransferase
L1_007_365G1_scaffold_597_7
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8641..9471)
DNA (831bp) protein (277aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=8 Tax=Clostridium RepID=N9XKY0_9CLOT
L1_007_365G1_scaffold_597_8
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9533..10081)
DNA (549bp) protein (183aa)
Two-component system response regulator n=9 Tax=Clostridium RepID=N9WSZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23363.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ANTAR domain-containing protein
L1_007_365G1_scaffold_597_9
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10127..11464)
DNA (1338bp) protein (446aa)
Glutamine synthetase, type I n=7 Tax=Clostridium RepID=N9WSG8_9CLOT
Glutamine synthetase {ECO:0000313|EMBL:CDF23364.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
glutamine synthetase, type I
L1_007_365G1_scaffold_597_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11674..12675)
DNA (1002bp) protein (334aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Diaminopimelate epimerase n=9 Tax=Clostridium RepID=G5I095_9CLOT
diaminopimelate epimerase
L1_007_365G1_scaffold_597_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12757..13626
DNA (870bp) protein (290aa)
AraC family transcriptional regulator n=6 Tax=Clostridium clostridioforme RepID=N9VZY4_9CLOT
AraC family transcriptional regulator {ECO:0000313|EMBL:ENZ66318.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
AraC family transcriptional regulator
L1_007_365G1_scaffold_597_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13773..14936
DNA (1164bp) protein (388aa)
Branched-chain amino acid ABC transporter substrate-binding protein n=8 Tax=Clostridium clostridioforme RepID=N9XKY4_9CLOT
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ENZ66317.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
extracellular ligand-binding receptor
L1_007_365G1_scaffold_597_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15091..15972
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC transporter permease n=8 Tax=Clostridium RepID=N9WT02_9CLOT
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:ENZ66316.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
inner-membrane translocator
L1_007_365G1_scaffold_597_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15983..17098
DNA (1116bp) protein (372aa)
Branched-chain amino acid ABC transporter permease n=6 Tax=Clostridium clostridioforme RepID=N9WSH5_9CLOT
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:ENZ66315.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
inner-membrane translocator
L1_007_365G1_scaffold_597_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17098..17964
DNA (867bp) protein (289aa)
Branched-chain amino acid ABC transporter ATP-binding protein n=9 Tax=Clostridium RepID=N9W0F3_9CLOT
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ66314.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ABC transporter
L1_007_365G1_scaffold_597_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17951..18658
DNA (708bp) protein (236aa)
Branched-chain amino acid ABC transporter ATP-binding protein n=8 Tax=Clostridium clostridioforme RepID=N9VZY8_9CLOT
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ66313.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ABC transporter
L1_007_365G1_scaffold_597_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18661..19302)
DNA (642bp) protein (214aa)
Orotate phosphoribosyltransferase n=7 Tax=Clostridium clostridioforme RepID=N9XKY9_9CLOT
Orotate phosphoribosyltransferase {ECO:0000313|EMBL:ENZ66312.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_365G1_scaffold_597_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19521..21566)
DNA (2046bp) protein (682aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=7 Tax=Clostridium clostridioforme RepID=G5I087_9CLOT
L1_007_365G1_scaffold_597_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21805..23421
DNA (1617bp) protein (539aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
CTP synthase n=9 Tax=Clostridium RepID=G5I086_9CLOT
pyrG; CTP synthetase
L1_007_365G1_scaffold_597_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23581..23745
DNA (165bp) protein (55aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9W0F7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66309.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_365G1_scaffold_597_21
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23840..24583)
DNA (744bp) protein (248aa)
Polar amino acid ABC transporter ATP-binding protein n=8 Tax=Clostridium RepID=N9VZZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23376.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ABC transporter
L1_007_365G1_scaffold_597_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24580..25383)
DNA (804bp) protein (268aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=10 Tax=Clostridium RepID=N9XKZ3_9CLOT
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:ENZ12298.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
polar amino acid ABC transporter inner membrane subunit
L1_007_365G1_scaffold_597_23
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25479..26423)
DNA (945bp) protein (315aa)
ABC transporter periplasmic protein n=10 Tax=Clostridium RepID=N9WT12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63807.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
family 3 extracellular solute-binding protein
L1_007_365G1_scaffold_597_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26535..26720)
DNA (186bp) protein (62aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WSI7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12296.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L1_007_365G1_scaffold_597_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26734..27651)
DNA (918bp) protein (306aa)
SrtB family sortase n=9 Tax=Clostridium RepID=G5I080_9CLOT
SrtB family sortase {ECO:0000313|EMBL:ENZ12295.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
sortase
L1_007_365G1_scaffold_597_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27678..28538)
DNA (861bp) protein (287aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VZZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12294.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L1_007_365G1_scaffold_597_27
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28735..29970
DNA (1236bp) protein (412aa)
SARP family transcriptional regulator n=8 Tax=Clostridium clostridioforme RepID=N9XKZ7_9CLOT
SARP family transcriptional regulator {ECO:0000313|EMBL:ENZ12293.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
SARP family transcriptional regulator
L1_007_365G1_scaffold_597_28
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29922..30038)
DNA (117bp) protein (39aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WT18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66301.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L1_007_365G1_scaffold_597_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30079..31458)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=10 Tax=Clostridium RepID=N9WSJ2_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ENZ12291.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
putative efflux protein, MATE family
L1_007_365G1_scaffold_597_30
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31610..33019)
DNA (1410bp) protein (470aa)
ErfK/YbiS/YcfS/YnhG family protein n=9 Tax=Clostridium RepID=N9W0G2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23385.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ErfK/YbiS/YcfS/YnhG family protein
Displaying items 1-30 of 42 in total

View Taxonomy