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L1_007_365G1_scaffold_642

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_642_1
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(171..1304)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E25 RepID=U3WZT5_CLODI
RES domain {ECO:0000313|EMBL:CEQ29791.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L1_007_365G1_scaffold_642_2
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1444..2007)
DNA (564bp) protein (188aa)
Transposase and inactivated derivatives n=1 Tax=Coprococcus catus GD/7 RepID=D4J4S9_9FIRM
Transposase and inactivated derivatives
Transposase and inactivated derivatives {ECO:0000313|EMBL:CBK79350.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L1_007_365G1_scaffold_642_3

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comp(1979..2452)
DNA (474bp) protein (158aa)
Integrase catalytic region n=2 Tax=human gut metagenome RepID=K1RYS3_9ZZZZ
Integrase catalytic region {ECO:0000313|EMBL:EKC53657.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Transposase and inactivated derivatives
L1_007_365G1_scaffold_642_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2764..3789)
DNA (1026bp) protein (342aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Ketol-acid reductoisomerase n=2 Tax=Eubacterium rectale RepID=D4JPE5_9FIRM
L1_007_365G1_scaffold_642_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3853..4353)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79885.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetolactate synthase 3 regulatory subunit
L1_007_365G1_scaffold_642_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4482..4883)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79884.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_642_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4899..6071)
DNA (1173bp) protein (391aa)
Dockerin type 1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNM4_9FIRM
Dockerin type 1 {ECO:0000313|EMBL:CCZ79883.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative surface/cell-adhesion protein
L1_007_365G1_scaffold_642_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6195..7679)
DNA (1485bp) protein (495aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BP83_9FIRM
Alpha-L-fucosidase {ECO:0000313|EMBL:CDA55062.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_007_365G1_scaffold_642_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7621..8133)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79882.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_642_10
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8230..10446)
DNA (2217bp) protein (739aa)
beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC20_9CLOT
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EDO58892.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L1_007_365G1_scaffold_642_11
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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comp(10469..12805)
DNA (2337bp) protein (779aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N4H8_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDF08389.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases
L1_007_365G1_scaffold_642_12
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12978..14756
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R2N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF44378.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L1_007_365G1_scaffold_642_13
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14774..16324
DNA (1551bp) protein (517aa)
Two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNN4_9CLOT
Two component transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EMS70744.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L1_007_365G1_scaffold_642_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16396..18174)
DNA (1779bp) protein (593aa)
Extracellular solute-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HXF6_9FIRM
Extracellular solute-binding protein {ECO:0000313|EMBL:CCY32839.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_642_15
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18234..19136)
DNA (903bp) protein (301aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41367.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_007_365G1_scaffold_642_16
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19152..20066)
DNA (915bp) protein (305aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R8_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41368.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_007_365G1_scaffold_642_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20328..21455)
DNA (1128bp) protein (376aa)
Esterase/lipase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L273_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL13713.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_365G1_scaffold_642_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21530..22708)
DNA (1179bp) protein (393aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP70_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sigma-70 family RNA polymerase sigma factor
L1_007_365G1_scaffold_642_19
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22766..22984)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0ANJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS82042.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
conserved hypothetical protein TIGR02687
L1_007_365G1_scaffold_642_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22995..23510)
DNA (516bp) protein (172aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79877.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_642_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23623..23856)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 PF38_9FIRM">RepID=U2PF38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK42746.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
membrane protein
L1_007_365G1_scaffold_642_22
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23853..24323)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6R4Q6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC40154.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
sortase
L1_007_365G1_scaffold_642_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24320..24556)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QN57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76313.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
AcrR; transcriptional regulator
L1_007_365G1_scaffold_642_24
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24741..24974)
DNA (234bp) protein (78aa)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4S2A1_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:CCY76695.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
L1_007_365G1_scaffold_642_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25130..25249)
DNA (120bp) protein (40aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L0V3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13243.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_365G1_scaffold_642_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25249..26316)
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L0V2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13242.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_365G1_scaffold_642_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26356..28419)
DNA (2064bp) protein (688aa)
ATP-dependent protease La n=1 Tax=Clostridium sp. CAG:62 RepID=R7CD07_9CLOT
ATP-dependent protease La {ECO:0000313|EMBL:CDD75198.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L1_007_365G1_scaffold_642_28
unknown

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comp(28412..29116)
DNA (705bp) protein (235aa)

This feature has no annotations

L1_007_365G1_scaffold_642_29
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29131..31677)
DNA (2547bp) protein (849aa)
Putative DNA repair protein n=1 Tax=Butyrivibrio crossotus CAG:259 RepID=R5LG85_9FIRM
Putative DNA repair protein {ECO:0000313|EMBL:CCY78198.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
TIGR02687 family protein
L1_007_365G1_scaffold_642_30
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31857..33335)
DNA (1479bp) protein (493aa)
Hypothetical conserved protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB71_9CLOT
Hypothetical conserved protein {ECO:0000313|EMBL:CDD75195.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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