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L1_007_365G1_scaffold_672

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_672_1
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

447..4016
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B877_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
smc; chromosome segregation protein SMC
L1_007_365G1_scaffold_672_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4262..4759
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CM66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI68416.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L1_007_365G1_scaffold_672_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4783..5682
DNA (900bp) protein (300aa)
Signal recognition particle receptor FtsY n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV1_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
signal recognition particle-docking protein FtsY
L1_007_365G1_scaffold_672_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5741..6457
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=3 Tax=Clostridiales RepID=G9YWV0_9FIRM
L1_007_365G1_scaffold_672_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6462..7052
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU9_9FIRM
L1_007_365G1_scaffold_672_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7095..7418
DNA (324bp) protein (108aa)
RNA-binding protein, YhbY family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54515.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L1_007_365G1_scaffold_672_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7438..8646
DNA (1209bp) protein (403aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate (Nicotinamide) nucleotide adenylyltransferase n=2 Tax=Clostridiales RepID=H1CF31_9FIRM
L1_007_365G1_scaffold_672_8
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8646..10070
DNA (1425bp) protein (475aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1CF30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32769.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative LytR family regulatory protein
L1_007_365G1_scaffold_672_9
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10087..11574
DNA (1488bp) protein (496aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CV31_9CLOT
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:ERI71131.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative LytR family regulatory protein
L1_007_365G1_scaffold_672_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11587..11946
DNA (360bp) protein (120aa)
Ribosomal silencing factor RsfS n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CPG9_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L1_007_365G1_scaffold_672_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12059..12565
DNA (507bp) protein (169aa)
RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BGY4_9CLOT
RNA polymerase sigma-70 factor, sigma-E family {ECO:0000313|EMBL:ERI71133.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ECF subfamily RNA polymerase sigma-24 subunit
L1_007_365G1_scaffold_672_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12562..13767
DNA (1206bp) protein (402aa)
Signal peptide protein, YSIRK family (Fragment) n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU2_9FIRM
Signal peptide protein, YSIRK family {ECO:0000313|EMBL:EHM38201.1}; Flags: Fragment;; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L1_007_365G1_scaffold_672_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13755..13889
DNA (135bp) protein (45aa)
Signal peptide protein, YSIRK family (Fragment) n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54498.1}; Flags: Fragment;; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L1_007_365G1_scaffold_672_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14040..14486)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32764.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L1_007_365G1_scaffold_672_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14490..14948)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54500.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L1_007_365G1_scaffold_672_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15088..17523
DNA (2436bp) protein (812aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=Clostridiales RepID=H1CF23_9FIRM
L1_007_365G1_scaffold_672_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17691..17873
DNA (183bp) protein (61aa)
30S ribosomal protein S21 n=3 Tax=Clostridiales RepID=G9YX14_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsU; 30S ribosomal protein S21
L1_007_365G1_scaffold_672_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17936..18553)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM38047.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Acetyltransferases
L1_007_365G1_scaffold_672_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18618..19394)
DNA (777bp) protein (259aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32759.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L1_007_365G1_scaffold_672_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19482..19991
DNA (510bp) protein (170aa)
HAD phosphatase, family IIIA n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CPC3_9CLOT
HAD phosphatase, family IIIA {ECO:0000313|EMBL:ERI71087.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
HAD family phosphatase
L1_007_365G1_scaffold_672_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19988..20836
DNA (849bp) protein (283aa)
AP endonuclease, family 2 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54506.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
xylose isomerase domain-containing protein TIM barrel
L1_007_365G1_scaffold_672_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21061..21279
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM38043.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L1_007_365G1_scaffold_672_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21357..22421
DNA (1065bp) protein (355aa)
proline aminopeptidase (EC:3.4.-.-)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32873.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L1_007_365G1_scaffold_672_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22503..23072
DNA (570bp) protein (190aa)
Elongation factor P n=2 Tax=Clostridiales RepID=H1CF16_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
efp; elongation factor P
L1_007_365G1_scaffold_672_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23494..23952
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BFR4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71040.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L1_007_365G1_scaffold_672_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24139..26598
DNA (2460bp) protein (820aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CUT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54482.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ferrous iron transporter FeoB
L1_007_365G1_scaffold_672_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26795..27520
DNA (726bp) protein (242aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=2 Tax=Clostridiales RepID=G9YX03_9FIRM
L1_007_365G1_scaffold_672_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27607..28164
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32868.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L1_007_365G1_scaffold_672_29
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28177..28398
DNA (222bp) protein (74aa)
DNA-binding protein n=3 Tax=Clostridiales RepID=G9YX01_9FIRM
DNA-binding protein {ECO:0000313|EMBL:ERI71045.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
DNA-binding protein
L1_007_365G1_scaffold_672_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28522..28983
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32866.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Displaying items 1-30 of 44 in total

View Taxonomy