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L1_007_365G1_scaffold_711

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_711_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..378)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SHU3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ45393.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L1_007_365G1_scaffold_711_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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671..1651
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9V8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95315.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L1_007_365G1_scaffold_711_3

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comp(1910..2956)
DNA (1047bp) protein (349aa)
Protein containing DUF1016 n=3 Tax=human gut metagenome RepID=K1SCA8_9ZZZZ
Protein containing DUF1016 {ECO:0000313|EMBL:EKC51370.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_365G1_scaffold_711_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2956..4224)
DNA (1269bp) protein (423aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K0C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44895.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
integrase family protein
L1_007_365G1_scaffold_711_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4316..4612)
DNA (297bp) protein (99aa)
DNA binding domain, excisionase family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDF1_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EDP20877.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Excisionase from transposon Tn916.
L1_007_365G1_scaffold_711_6
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4725..7064
DNA (2340bp) protein (780aa)
Putative excinuclease ABC, A subunit n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LLS1_9FIRM
Putative excinuclease ABC, A subunit {ECO:0000313|EMBL:EFU77229.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
SCM10.06; excinuclease ABC subunit A
L1_007_365G1_scaffold_711_7
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7096..8151
DNA (1056bp) protein (352aa)
Radical SAM domain protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LLS2_9FIRM
Radical SAM additional 4Fe4S-binding SPASM domain protein {ECO:0000313|EMBL:ETO98917.1}; TaxID=936596 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
Radical SAM domain protein
L1_007_365G1_scaffold_711_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8607..10118)
DNA (1512bp) protein (504aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9U9_9FIRM
L1_007_365G1_scaffold_711_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10138..10623)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9U8_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
transcription elongation factor GreA
L1_007_365G1_scaffold_711_10
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10941..14402)
DNA (3462bp) protein (1154aa)
Ig domain protein group 2 domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M7D9_9CLOT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:EHJ02118.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Ig-like domain-containing surface protein
L1_007_365G1_scaffold_711_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14858..16159
DNA (1302bp) protein (434aa)
MATE efflux family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9U5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEU95302.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Na+-driven multidrug efflux pump
L1_007_365G1_scaffold_711_12
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16207..17052)
DNA (846bp) protein (282aa)
Transcriptional regulator AraC family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R6D5_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDC29922.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
AraC family transcriptional regulator
L1_007_365G1_scaffold_711_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17180..18295
DNA (1116bp) protein (372aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9U2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU95417.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_365G1_scaffold_711_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18500..19366)
DNA (867bp) protein (289aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9U0_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95415.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L1_007_365G1_scaffold_711_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19366..20343)
DNA (978bp) protein (326aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95414.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_007_365G1_scaffold_711_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20456..21895)
DNA (1440bp) protein (480aa)
Tat pathway signal sequence domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T8_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEU95413.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_365G1_scaffold_711_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21980..22990)
DNA (1011bp) protein (337aa)
Sugar-binding domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T7_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:EEU95411.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
transcriptional regulator, LacI family
L1_007_365G1_scaffold_711_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23414..25849
DNA (2436bp) protein (812aa)
cellobiose phosphorylase (EC:2.4.1.20)
Glycosyltransferase family 36 n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T5_9FIRM
Glycosyltransferase family 36 {ECO:0000313|EMBL:EEU95410.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_007_365G1_scaffold_711_19
Bifidobacterium stercoris, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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25997..27724
DNA (1728bp) protein (576aa)
Uncharacterized conserved protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6ZBP7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KFI98579.1}; TaxID=592977 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stercoris.;"
hypothetical protein
L1_007_365G1_scaffold_711_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27779..28555)
DNA (777bp) protein (259aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T4_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU95409.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L1_007_365G1_scaffold_711_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28545..29309)
DNA (765bp) protein (255aa)
ABC transporter, permease protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9T3_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEU95408.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L1_007_365G1_scaffold_711_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29418..30242)
DNA (825bp) protein (275aa)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K856_9FIRM
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CBL01019.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_365G1_scaffold_711_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30532..30990)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95403.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L1_007_365G1_scaffold_711_24
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30987..31781)
DNA (795bp) protein (265aa)
Uncharacterized conserved protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QB94_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC30349.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
hypothetical protein
L1_007_365G1_scaffold_711_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31916..33820)
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9S5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95400.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
X-X-X-Leu-X-X-Gly heptad repeats
L1_007_365G1_scaffold_711_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33826..35925)
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9S4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95399.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted exporters of the RND superfamily
L1_007_365G1_scaffold_711_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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36175..36768
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9S2_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEU95397.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Transcriptional regulator
L1_007_365G1_scaffold_711_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37076..37840
DNA (765bp) protein (255aa)
Phosphorylase family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9P8_9FIRM
Phosphorylase family {ECO:0000313|EMBL:EEU95373.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phosphorylase (pnp/udp family)
Displaying 28 items

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