ggKbase home page

L1_007_365G1_scaffold_877

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_877_1
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..258
-----------------
DNA (258bp)
protein (86aa)
Integrase core domain-containing protein (Fragment) n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5Y165_9BIFI
transposase
Integrase {ECO:0000313|EMBL:EFV36876.1}; Flags: Fragment;; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L1_007_365G1_scaffold_877_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(384..2471)
-----------------
DNA (2088bp)
protein (696aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
DNA primase n=5 Tax=Bifidobacterium longum RepID=C2GUP7_BIFLN
dnaG; DNA primase
L1_007_365G1_scaffold_877_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2635..3942)
-----------------
DNA (1308bp)
protein (436aa)
Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) RepID=E8MH81_BIFL2
deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase {ECO:0000313|EMBL:BAJ66134.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_365G1_scaffold_877_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4114..5466)
-----------------
DNA (1353bp)
protein (451aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
Alanine racemase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MS79_BIFL1
alanine racemase
L1_007_365G1_scaffold_877_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5812..7035
-----------------
DNA (1224bp)
protein (408aa)
Amino acid permease-associated region n=3 Tax=Bifidobacterium longum RepID=D6ZT09_BIFLJ
amino acid transport protein
Putative amino acid transport protein {ECO:0000313|EMBL:BAJ70622.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_365G1_scaffold_877_6
Alloscardovia omnicolens, Alloscardovia, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7733..8764
-----------------
DNA (1032bp)
protein (344aa)
Transcriptional regulator, LacI family n=1 Tax=Alloscardovia omnicolens F0580 RepID=U1SMK5_9BIFI
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ERH31887.1}; TaxID=1321816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Alloscardovia.;" source="Alloscardovia omnicolens F0580.;"
LacI family transcriptional regulator
L1_007_365G1_scaffold_877_7
Bifidobacterium stellenboschense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9008..10312
-----------------
DNA (1305bp)
protein (435aa)
ABC transporter, solute-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0QAA3_9BIFI
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFJ01390.1}; TaxID=762211 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stellenboschense.;"
ABC transporter, solute-binding protein
L1_007_365G1_scaffold_877_8
Bifidobacterium stellenboschense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10451..11392
-----------------
DNA (942bp)
protein (314aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BV47_9BIFI
ABC transporter permease {ECO:0000313|EMBL:KFJ01389.1}; TaxID=762211 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stellenboschense.;"
ABC transporter permease
L1_007_365G1_scaffold_877_9
Bifidobacterium stellenboschense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11466..12344
-----------------
DNA (879bp)
protein (293aa)
Sugar ABC transporter, permease protein n=3 Tax=Bifidobacterium dentium RepID=D2Q7F9_BIFDB
ABC transporter permease {ECO:0000313|EMBL:KFJ01388.1}; TaxID=762211 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium stellenboschense.;"
sugar ABC transporter permease
L1_007_365G1_scaffold_877_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12423..13562
-----------------
DNA (1140bp)
protein (380aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AS90_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI97970.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L1_007_365G1_scaffold_877_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13820..14305)
-----------------
DNA (486bp)
protein (162aa)
Acetyltransferase (GNAT) domain protein n=5 Tax=Bifidobacterium longum RepID=I3ASX6_BIFLN
wecD; wecd
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ66129.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L1_007_365G1_scaffold_877_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14606..15100)
-----------------
DNA (495bp)
protein (165aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
S-ribosylhomocysteine lyase n=2 Tax=Bifidobacterium longum subsp. longum RepID=D6ZT07_BIFLJ
quorum-sensing autoinducer 2 LuxS
L1_007_365G1_scaffold_877_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15213..17168)
-----------------
DNA (1956bp)
protein (652aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EIJ23185.1}; EC=3.6.4.12 {ECO:0000313|EMBL:EIJ23185.1};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
ATP-dependent DNA helicase RecQ n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AVP2_BIFLN
recQ; ATP-dependent DNA helicase RecQ
L1_007_365G1_scaffold_877_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17328..19052
-----------------
DNA (1725bp)
protein (575aa)
Ykud domain protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I216_BIFLN
Ykud domain protein {ECO:0000313|EMBL:CCK34496.1}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
hypothetical protein
L1_007_365G1_scaffold_877_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19190..20374)
-----------------
DNA (1185bp)
protein (395aa)
Cystathionine beta-lyases/cystathionine gamma-synthase n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DT90_BIFLD
metC3; cystathionine gamma-synthase
Cystathionine beta-lyases/cystathionine gamma-synthase {ECO:0000313|EMBL:ACD98359.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_365G1_scaffold_877_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20466..21533)
-----------------
DNA (1068bp)
protein (356aa)
Cystathionine beta-synthase n=4 Tax=Bifidobacterium longum subsp. longum RepID=D6ZT03_BIFLJ
cystathionine beta-synthase
Pyridoxal-phosphate dependent protein {ECO:0000313|EMBL:EIJ32164.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L1_007_365G1_scaffold_877_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22017..22802)
-----------------
DNA (786bp)
protein (262aa)
ABC-type oligopeptide transport system ATPase component n=7 Tax=Bifidobacterium RepID=B3DT92_BIFLD
peptide ABC transporter ATP-binding protein
Peptide ABC transporter ATPase {ECO:0000313|EMBL:KEY32463.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_007_365G1_scaffold_877_18
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22795..23586)
-----------------
DNA (792bp)
protein (264aa)
Peptides ABC transporter ATP-binding component n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MVI1_9BIFI
Peptides ABC transporter ATP-binding component {ECO:0000313|EMBL:CCY95780.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
dppD; dipeptide/oligopeptide/nickel ABC transporter ATPase
L1_007_365G1_scaffold_877_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23583..24485)
-----------------
DNA (903bp)
protein (301aa)
Peptides ABC transporter permease component n=9 Tax=Bifidobacterium RepID=E8MH68_BIFL2
peptide ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIW43444.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L1_007_365G1_scaffold_877_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24482..25459)
-----------------
DNA (978bp)
protein (326aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ARZ6_BIFLN
ABC transporter, permease protein {ECO:0000313|EMBL:EIJ21889.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
dppB3; dppb3
L1_007_365G1_scaffold_877_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25524..27143)
-----------------
DNA (1620bp)
protein (540aa)
Peptides ABC transporter substrate binding component n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MS67_BIFL1
peptides ABC transporter substrate-binding protein
Peptides ABC transporter substrate binding component {ECO:0000313|EMBL:BAJ70611.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L1_007_365G1_scaffold_877_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27269..28039
-----------------
DNA (771bp)
protein (257aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Type III pantothenate kinase n=6 Tax=Bifidobacterium RepID=COAX_BIFLD
L1_007_365G1_scaffold_877_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28099..29520)
-----------------
DNA (1422bp)
protein (474aa)
Bacterial extracellular solute-binding protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XY92_9BIFI
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHD95938.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
male-type abc sugar transport system periplasmic component
L1_007_365G1_scaffold_877_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29636..30979)
-----------------
DNA (1344bp)
protein (448aa)
MalE-type ABC sugar transport system periplasmic component n=19 Tax=Bacteria RepID=B3DT99_BIFLD
sugar ABC transporter substrate-binding protein
MalE-type ABC sugar transport system periplasmic component {ECO:0000313|EMBL:ACD98368.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L1_007_365G1_scaffold_877_25
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31311..32663)
-----------------
DNA (1353bp)
protein (451aa)
Bacterial extracellular solute-binding protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XYC7_9BIFI
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:EFV37368.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
sugar ABC transporter substrate-binding protein
L1_007_365G1_scaffold_877_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32823..34523
-----------------
DNA (1701bp)
protein (567aa)
Putative alpha-N-arabinofuranosidase n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E8J3_BIFLI
Putative alpha-N-arabinofuranosidase {ECO:0000313|EMBL:EEQ54210.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
abfA2; abfa2
L1_007_365G1_scaffold_877_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34643..35656)
-----------------
DNA (1014bp)
protein (338aa)
Transcriptional regulator n=2 Tax=Bifidobacterium longum RepID=E8MH60_BIFL2
transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEQ54211.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L1_007_365G1_scaffold_877_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35781..36407)
-----------------
DNA (627bp)
protein (209aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Beta-galactosidase n=4 Tax=Bifidobacterium RepID=D6ZSZ0_BIFLJ
lacA1; laca1
Displaying 28 items

View Taxonomy