ggKbase home page

L1_007_365G1_scaffold_895

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_895_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..327)
DNA (327bp) protein (109aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L294_BIFBR
Ribonucleoside-diphosphate reductase alpha chain
L1_007_365G1_scaffold_895_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(336..836)
DNA (501bp) protein (167aa)
ribonucleotide reductase n=1 Tax=Bifidobacterium breve RepID=UPI0002DEE477
NrdI protein
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_365G1_scaffold_895_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(833..1099)
DNA (267bp) protein (89aa)
Glutaredoxin nrdH n=2 Tax=Bifidobacterium breve RepID=F9XZY2_BIFBU
Glutaredoxin nrdH
Glutaredoxin nrdH {ECO:0000313|EMBL:AHJ20243.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_365G1_scaffold_895_4
unknown

Not on your lists

comp(1455..1586)
DNA (132bp) protein (44aa)

This feature has no annotations

L1_007_365G1_scaffold_895_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1649..2302)
DNA (654bp) protein (218aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C8Z3_BIFBA
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EFE90112.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_365G1_scaffold_895_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2295..4796)
DNA (2502bp) protein (834aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C8Z4_BIFBA
glycosyl hydrolase family 3, N-terminal domain protein
Glycosyl hydrolase family 3 protein {ECO:0000313|EMBL:ERI86647.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_895_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5095..5745)
DNA (651bp) protein (217aa)
DNA-binding helix-turn-helix protein n=2 Tax=Bifidobacterium breve RepID=F6C8Z5_BIFBA
Hypothetical protein with helix-turn-helix motif
Uncharacterized protein {ECO:0000313|EMBL:AHJ22076.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_365G1_scaffold_895_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5726..6409)
DNA (684bp) protein (228aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C8Z6_BIFBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE96567.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_365G1_scaffold_895_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6645..7169
DNA (525bp) protein (175aa)
Ion channel n=2 Tax=Bifidobacterium breve RepID=F6C8Z7_BIFBA
Potassium channel protein
Potassium transport protein {ECO:0000313|EMBL:BAR00948.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_365G1_scaffold_895_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7294..10197)
DNA (2904bp) protein (968aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=2 Tax=Bifidobacterium breve RepID=F6C8Z8_BIFBA
glycosyl hydrolase family 3, N-terminal domain protein
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:AEF27581.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_365G1_scaffold_895_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10714..12906
DNA (2193bp) protein (731aa)
protein kinase n=1 Tax=Bifidobacterium breve RepID=UPI00036E0E0F
Serine/threonine protein kinase
Kinase domain protein {ECO:0000313|EMBL:ERI86537.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_895_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13019..13948
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BLD1_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR00952.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_007_365G1_scaffold_895_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14470..15960
DNA (1491bp) protein (497aa)
G5 domain protein n=2 Tax=Bifidobacterium breve RepID=F6C974_BIFBA
hypothetical secreted protein with G5 and DUF348 domains
G5 domain protein {ECO:0000313|EMBL:AEF27748.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_365G1_scaffold_895_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15981..16910
DNA (930bp) protein (310aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Ribosomal RNA small subunit methyltransferase A n=4 Tax=Bifidobacterium breve RepID=F9XZZ2_BIFBU
Dimethyladenosine transferase
L1_007_365G1_scaffold_895_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16907..17854
DNA (948bp) protein (316aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2A7_BIFBR
L1_007_365G1_scaffold_895_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17900..18529
DNA (630bp) protein (210aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C977_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ22084.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_365G1_scaffold_895_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18658..20076)
DNA (1419bp) protein (473aa)
tRNA adenylyltransferase (EC:2.7.7.72)
tRNA adenylyltransferase {ECO:0000313|EMBL:AEF28080.1}; EC=2.7.7.72 {ECO:0000313|EMBL:AEF28080.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
tRNA adenylyltransferase n=3 Tax=Bifidobacterium breve RepID=F6C978_BIFBA
L1_007_365G1_scaffold_895_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20163..21149
DNA (987bp) protein (329aa)
Phosphohydrolase (MutT/nudix family protein) n=3 Tax=Bifidobacterium breve RepID=F9XZZ6_BIFBU
Phosphohydrolase (MutT/nudix family protein)
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:AHJ20252.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L1_007_365G1_scaffold_895_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21107..23299
DNA (2193bp) protein (731aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI0003676683
putative secreted protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ABE96578.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_365G1_scaffold_895_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23296..27075
DNA (3780bp) protein (1260aa)
Conserved hypothetical membrane spanning protein with virulence factor mviN domain n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZZ8_BIFBU
Conserved hypothetical membrane spanning protein with virulence factor mviN domain
Conserved hypothetical membrane spanning protein with virulence factor mviN domain {ECO:0000313|EMBL:ABE96579.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_365G1_scaffold_895_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27277..28296
DNA (1020bp) protein (340aa)
trxB2; Thioredoxin reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2DXX1_BIFBR
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:ERI86547.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_895_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28413..29678)
DNA (1266bp) protein (422aa)
ParB-like protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CR44_BIFBR
parB2; Chromosome partitioning protein parB
ParB-like protein {ECO:0000313|EMBL:ERI86548.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_007_365G1_scaffold_895_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29678..30646)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZHS7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76298.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
parA3; Chromosome partitioning protein parA
L1_007_365G1_scaffold_895_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30899..31564)
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Ribosomal RNA small subunit methyltransferase G n=5 Tax=Bifidobacterium breve RepID=F6C985_BIFBA
Methyltransferase gidB (Glucose inhibited division protein B)
L1_007_365G1_scaffold_895_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31688..32224)
DNA (537bp) protein (179aa)
Jag protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0F5_BIFBU
Jag protein
Jag protein {ECO:0000313|EMBL:ABE96584.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_007_365G1_scaffold_895_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32347..33357)
DNA (1011bp) protein (337aa)
Inner membrane protein (Preprotein translocase subunit YidC) n=4 Tax=Bifidobacterium breve RepID=F9Y0F6_BIFBU
Inner membrane protein (Preprotein translocase subunit YidC)
Inner membrane protein (Preprotein translocase subunit YidC) {ECO:0000313|EMBL:AHJ22094.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_007_365G1_scaffold_895_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33675..34025)
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
ribonuclease P n=1 Tax=Bifidobacterium breve RepID=UPI000192F0A1
Ribonuclease P protein component
L1_007_365G1_scaffold_895_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34057..34191)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=5 Tax=Bifidobacterium breve RepID=F6C989_BIFBA
LSU ribosomal protein L34P
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_007_365G1_scaffold_895_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34510..35976
DNA (1467bp) protein (489aa)
Chromosomal replication initiator protein DnaA n=6 Tax=Bifidobacterium breve RepID=F6C5B2_BIFBA
Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_007_365G1_scaffold_895_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36552..37676
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DNA polymerase III subunit beta n=5 Tax=Bifidobacterium breve RepID=F6C5B3_BIFBA
DNA polymerase III, beta chain
Displaying items 1-30 of 46 in total

View Taxonomy