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L1_007_365G1_scaffold_983

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_983_1
unknown

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3..425
-----------------
DNA (423bp)
protein (141aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium bolteae 90B3 RepID=N9ZEB4_9CLOT
L1_007_365G1_scaffold_983_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(368..922)
-----------------
DNA (555bp)
protein (185aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78855.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_365G1_scaffold_983_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(935..1780)
-----------------
DNA (846bp)
protein (282aa)
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5X2_9FIRM
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit {ECO:0000313|EMBL:CCZ78856.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha
L1_007_365G1_scaffold_983_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1777..4278)
-----------------
DNA (2502bp)
protein (834aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA gyrase subunit A n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDK1_9FIRM
DNA gyrase, A subunit
L1_007_365G1_scaffold_983_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4293..6227)
-----------------
DNA (1935bp)
protein (645aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKN8_9FIRM
L1_007_365G1_scaffold_983_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6263..7363)
-----------------
DNA (1101bp)
protein (367aa)
DNA replication and repair protein RecF n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT29_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
recF protein
L1_007_365G1_scaffold_983_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7360..7575)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78860.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_983_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7584..8696)
-----------------
DNA (1113bp)
protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5X5_9FIRM
L1_007_365G1_scaffold_983_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8993..10345)
-----------------
DNA (1353bp)
protein (451aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDK6_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chromosomal replication initiator protein DnaA
L1_007_365G1_scaffold_983_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10780..10914
-----------------
DNA (135bp)
protein (45aa)
50S ribosomal protein L34 n=3 Tax=Roseburia RepID=G2T624_ROSHA
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L1_007_365G1_scaffold_983_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10960..11295
-----------------
DNA (336bp)
protein (112aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKP3_9FIRM
L1_007_365G1_scaffold_983_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11547..12899
-----------------
DNA (1353bp)
protein (451aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78864.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Preprotein translocase subunit YidC
L1_007_365G1_scaffold_983_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12914..13537
-----------------
DNA (624bp)
protein (208aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78865.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted RNA-binding protein
L1_007_365G1_scaffold_983_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13617..14993
-----------------
DNA (1377bp)
protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tRNA modification GTPase MnmE n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5Y0_9FIRM
tRNA modification GTPase trmE
L1_007_365G1_scaffold_983_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15005..16996
-----------------
DNA (1992bp)
protein (664aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDL0_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glucose-inhibited division protein A
L1_007_365G1_scaffold_983_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17008..17721
-----------------
DNA (714bp)
protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKP9_9FIRM
L1_007_365G1_scaffold_983_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17826..18776)
-----------------
DNA (951bp)
protein (317aa)
Alpha/beta hydrolase fold protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UT40_9FIRM
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CCZ78869.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
alpha/beta hydrolase fold protein
L1_007_365G1_scaffold_983_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18943..19962
-----------------
DNA (1020bp)
protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. (EC:2.7.13.3)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase./Histidine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULE5_9FIRM
L1_007_365G1_scaffold_983_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19965..20606
-----------------
DNA (642bp)
protein (214aa)
Two-component response regulator (Extracellular proteinase response regulator) n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5Y6_9FIRM
Two-component response regulator (Extracellular proteinase response regulator) {ECO:0000313|EMBL:CCZ78871.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L1_007_365G1_scaffold_983_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22193..22804
-----------------
DNA (612bp)
protein (204aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKY6_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_983_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22849..23616
-----------------
DNA (768bp)
protein (256aa)
ATPases involved in chromosome partitioning n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDU8_9FIRM
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CCZ78942.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ATPases involved in chromosome partitioning
L1_007_365G1_scaffold_983_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23634..24545
-----------------
DNA (912bp)
protein (304aa)
Predicted transcriptional regulators n=1 Tax=Roseburia sp. CAG:18 RepID=R5V659_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CCZ78941.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted transcriptional regulators
L1_007_365G1_scaffold_983_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24619..25131
-----------------
DNA (513bp)
protein (171aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78940.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_365G1_scaffold_983_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25144..26172
-----------------
DNA (1029bp)
protein (343aa)
HD-GYP domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTB2_9FIRM
HD-GYP domain {ECO:0000313|EMBL:CCZ78939.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
HD-GYP domain
L1_007_365G1_scaffold_983_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26211..27083
-----------------
DNA (873bp)
protein (291aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78938.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
Displaying 25 items

View Taxonomy