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L1_007_365G1_scaffold_1294

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_1294_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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206..445
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQ79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32680.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_365G1_scaffold_1294_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

420..1106
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C9Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23825.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pphA; Serine/threonine protein phosphatase
L1_007_365G1_scaffold_1294_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1161..1796
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32678.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Uncharacterised ACR, YkgG family COG1556.
L1_007_365G1_scaffold_1294_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1929..3077
DNA (1149bp) protein (383aa)
Sortase, SrtB family n=2 Tax=Ruminococcus lactaris RepID=B5CQ75_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:EDY32676.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
sortase, SrtB family
L1_007_365G1_scaffold_1294_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3155..3343
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23828.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_1294_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3472..3759
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=3 Tax=root RepID=B5CQ73_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
SSU ribosomal protein S6P
L1_007_365G1_scaffold_1294_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3781..4221
DNA (441bp) protein (147aa)
Single-stranded DNA-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ72_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
single-strand binding protein
L1_007_365G1_scaffold_1294_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4243..4509
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=2 Tax=Ruminococcus lactaris RepID=B5CQ71_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
SSU ribosomal protein S18P
L1_007_365G1_scaffold_1294_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4743..6788
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C9Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23832.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_007_365G1_scaffold_1294_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6790..7239
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=2 Tax=Ruminococcus lactaris RepID=B5CQ69_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
LSU ribosomal protein L9P
L1_007_365G1_scaffold_1294_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7253..8608
DNA (1356bp) protein (452aa)
Replicative DNA helicase {ECO:0000313|EMBL:EDY32669.1}; EC=3.6.1.- {ECO:0000313|EMBL:EDY32669.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=2 Tax=Ruminococcus lactaris RepID=B5CQ68_9FIRM
L1_007_365G1_scaffold_1294_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8764..9501)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C9Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD23835.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted transcriptional regulators
L1_007_365G1_scaffold_1294_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9821..9991)
DNA (171bp) protein (57aa)
Ferredoxin n=2 Tax=Ruminococcus lactaris RepID=B5CQ65_9FIRM
Ferredoxin {ECO:0000313|EMBL:EDY32666.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L1_007_365G1_scaffold_1294_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10160..11683)
DNA (1524bp) protein (508aa)
Sodium/proline symporter n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C9R1_9FIRM
Sodium/proline symporter {ECO:0000313|EMBL:ETD23837.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
sodium/proline symporter
L1_007_365G1_scaffold_1294_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12003..13352
DNA (1350bp) protein (450aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32664.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_365G1_scaffold_1294_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13471..14883)
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C904_9FIRM
Signal transduction histidine kinase
L1_007_365G1_scaffold_1294_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14916..15617)
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ61_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDY32662.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_365G1_scaffold_1294_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15649..18024)
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAR9_9FIRM
MutS2 family protein
L1_007_365G1_scaffold_1294_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18175..19449
DNA (1275bp) protein (425aa)
PDZ/DHR/GLGF domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CQ59_9FIRM
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:EDY32660.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Displaying 19 items

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