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L1_007_365G1_scaffold_750

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_750_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(477..1634)
DNA (1158bp) protein (386aa)
glycerate kinase (EC:2.7.1.31)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CFQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25546.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_750_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1631..2233)
DNA (603bp) protein (201aa)
Thiamine monophosphate synthase (EC:2.5.1.3)
Thiamine-phosphate pyrophosphorylase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEW5_9FIRM
Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:ETD25545.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_750_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2259..3542)
DNA (1284bp) protein (428aa)
Thiazole biosynthesis protein ThiH n=2 Tax=Ruminococcus lactaris RepID=B5CTD4_9FIRM
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:EDY31556.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
tyrosine lyase ThiH
L1_007_365G1_scaffold_750_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3554..4330)
DNA (777bp) protein (259aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Thiazole synthase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CDR4_9FIRM
thiazole-phosphate synthase
L1_007_365G1_scaffold_750_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4363..4998)
DNA (636bp) protein (212aa)
thiamine biosynthesis protein ThiF, family 2 (EC:2.7.7.-)
Thiamine biosynthesis protein ThiF n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEN1_9FIRM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:ETD25542.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_750_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5001..5198)
DNA (198bp) protein (66aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CFP9_9FIRM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ETD25541.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
sulfur carrier protein ThiS
L1_007_365G1_scaffold_750_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5585..6697)
DNA (1113bp) protein (371aa)
ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components (EC:3.6.3.34)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTD9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY31561.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_365G1_scaffold_750_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6701..7741)
DNA (1041bp) protein (347aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE0_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EDY31562.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC-type Fe3+-siderophore transport system, permease component
L1_007_365G1_scaffold_750_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7752..8963)
DNA (1212bp) protein (404aa)
Periplasmic binding protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE1_9FIRM
Periplasmic binding protein {ECO:0000313|EMBL:EDY31563.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
L1_007_365G1_scaffold_750_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8964..13553)
DNA (4590bp) protein (1530aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25537.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13989..15044)
DNA (1056bp) protein (352aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE3_9FIRM
L1_007_365G1_scaffold_750_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15192..16175)
DNA (984bp) protein (328aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE4_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EDY31566.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
dehydrogenase
L1_007_365G1_scaffold_750_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16263..17678)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CDW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25534.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
MATE efflux family protein
L1_007_365G1_scaffold_750_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17710..19374)
DNA (1665bp) protein (555aa)
Purine catabolism regulatory protein-like family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE6_9FIRM
Purine catabolism regulatory protein-like family {ECO:0000313|EMBL:EDY31568.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Regulator of polyketide synthase expression
L1_007_365G1_scaffold_750_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19574..20878)
DNA (1305bp) protein (435aa)
Chloride transporter, ClC family n=2 Tax=Ruminococcus lactaris RepID=B5CTE8_9FIRM
Chloride transporter, ClC family {ECO:0000313|EMBL:EDY31570.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Chloride channel protein EriC
L1_007_365G1_scaffold_750_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21082..22077)
DNA (996bp) protein (332aa)
Bile acid transporter n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CTE9_9FIRM
Bile acid transporter {ECO:0000313|EMBL:EDY31571.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted Na+-dependent transporter
L1_007_365G1_scaffold_750_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22441..23520)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25530.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23703..24164)
DNA (462bp) protein (154aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ruminococcus lactaris RepID=B5CTF1_9FIRM
FKBP-type peptidyl-prolyl cis-trans isomerases 2
L1_007_365G1_scaffold_750_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24185..25249)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CTF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25528.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25571..28726)
DNA (3156bp) protein (1052aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25527.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29030..30052
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CFN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25526.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
apbE; thiamin biosynthesis lipoprotein ApbE
L1_007_365G1_scaffold_750_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30071..30625)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CEU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25525.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30804..31913
DNA (1110bp) protein (370aa)
Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CMK4_9FIRM
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EDY33444.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Endonuclease/Exonuclease/phosphatase family.
L1_007_365G1_scaffold_750_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32048..32992)
DNA (945bp) protein (315aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=2 Tax=Ruminococcus lactaris RepID=B5CMK5_9FIRM
L1_007_365G1_scaffold_750_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33363..33932)
DNA (570bp) protein (190aa)
Chromate transport protein n=2 Tax=Ruminococcus lactaris RepID=B5CMK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25522.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Chromate transport protein ChrA
L1_007_365G1_scaffold_750_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33934..34509)
DNA (576bp) protein (192aa)
Chromate transport protein n=2 Tax=Ruminococcus lactaris RepID=B5CMK7_9FIRM
Chromate transport protein {ECO:0000313|EMBL:EDY33447.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Chromate transport protein ChrA
L1_007_365G1_scaffold_750_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34580..35341)
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CMK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25520.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_750_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35381..35587)
DNA (207bp) protein (69aa)
DNA-binding helix-turn-helix protein n=2 Tax=Ruminococcus lactaris RepID=B5CMK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25519.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted transcriptional regulators
Displaying 28 items

View Taxonomy