ggKbase home page

L1_007_365G1_scaffold_801

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_801_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

145..447
DNA (303bp) protein (101aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.7 6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAX1_9FIRM
L1_007_365G1_scaffold_801_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

464..1954
DNA (1491bp) protein (497aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.- 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBW4_9FIRM
L1_007_365G1_scaffold_801_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1957..3390
DNA (1434bp) protein (478aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.- 6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCR4_9FIRM
L1_007_365G1_scaffold_801_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3692..8839
DNA (5148bp) protein (1716aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24492.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
sialidase-like protein
L1_007_365G1_scaffold_801_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9181..10242
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24493.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_801_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10701..11897
DNA (1197bp) protein (399aa)
Cobalt chelatase (CbiK) {ECO:0000313|EMBL:EDY32556.1}; EC=4.99.1.- {ECO:0000313|EMBL:EDY32556.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Cobalt chelatase (CbiK) n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQA9_9FIRM
Cobalamin biosynthesis protein CbiK, Co2+ chelatase
L1_007_365G1_scaffold_801_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11911..12462
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32557.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_365G1_scaffold_801_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12654..13445
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24496.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_801_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13594..14445
DNA (852bp) protein (284aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQB3_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_365G1_scaffold_801_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14430..15308
DNA (879bp) protein (293aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQB4_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_365G1_scaffold_801_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15305..16129
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAY1_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L1_007_365G1_scaffold_801_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16163..16903
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine(38-40) synthase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBX4_9FIRM
L1_007_365G1_scaffold_801_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17001..17708
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24501.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
two-component response regulator
L1_007_365G1_scaffold_801_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17722..18996
DNA (1275bp) protein (425aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32565.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_007_365G1_scaffold_801_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19172..20377
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32566.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_365G1_scaffold_801_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20449..21708
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24505.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_801_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21743..21880
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24506.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_801_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21928..24219
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32569.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_365G1_scaffold_801_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24210..25085
DNA (876bp) protein (292aa)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQC3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY32570.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC-type multidrug transport system, ATPase component
L1_007_365G1_scaffold_801_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25358..26089
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Glucosamine-6-phosphate deaminase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQC4_9FIRM
glucosamine-6-phosphate isomerase
L1_007_365G1_scaffold_801_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26422..27258
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24510.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
transcriptional antiterminator, BglG family
L1_007_365G1_scaffold_801_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27308..27793
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CCT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24511.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
PTS system IIA component, Glc family (TC 4.A.1)
L1_007_365G1_scaffold_801_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27907..29376
DNA (1470bp) protein (490aa)
PTS system, N-acetylglucosamine-specific IIBC component n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBQ5_9FIRM
PTS system, N-acetylglucosamine-specific IIBC component {ECO:0000313|EMBL:ETD24512.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_007_365G1_scaffold_801_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29580..30353
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CAT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24513.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterized protein involved in copper resistance
L1_007_365G1_scaffold_801_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30703..31926
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQD0_9FIRM
L1_007_365G1_scaffold_801_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32012..32518
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CQD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD24515.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L1_007_365G1_scaffold_801_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32528..33031
DNA (504bp) protein (168aa)
Lipoprotein signal peptidase {ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|SAAS:SAAS00112508};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Lipoprotein signal peptidase (EC:3.4.23.36)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQD2_9FIRM
L1_007_365G1_scaffold_801_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33067..33435)
DNA (369bp) protein (123aa)
Transcriptional regulator, ArsR family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQD3_9FIRM
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EDY32580.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
transcriptional regulator, ArsR family
L1_007_365G1_scaffold_801_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33452..33655)
DNA (204bp) protein (68aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CM83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33593.1}; Flags: Fragment;; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Displaying 29 items

View Taxonomy