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L1_007_365G1_scaffold_858

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_858_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(191..1507)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17764.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Transglutaminase-like superfamily.
L1_007_365G1_scaffold_858_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1559..2824)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17763.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Putative peptidoglycan-binding domain-containing protein
L1_007_365G1_scaffold_858_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2952..3983)
DNA (1032bp) protein (344aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
RIP metalloprotease RseP n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BSJ1_9FIRM
RIP metalloprotease RseP
L1_007_365G1_scaffold_858_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3987..5129)
DNA (1143bp) protein (381aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Ruminococcus lactaris RepID=B5CR71_9FIRM
L1_007_365G1_scaffold_858_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5180..5992)
DNA (813bp) protein (271aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CR70_9FIRM
L1_007_365G1_scaffold_858_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5992..6702)
DNA (711bp) protein (237aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Di-trans,poly-cis-decaprenylcistransferase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRM2_9FIRM
L1_007_365G1_scaffold_858_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6783..7334)
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=2 Tax=Ruminococcus lactaris RepID=B5CR68_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ribosome recycling factor
L1_007_365G1_scaffold_858_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7349..8044)
DNA (696bp) protein (232aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=2 Tax=Ruminococcus lactaris RepID=B5CR67_9FIRM
L1_007_365G1_scaffold_858_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8120..8800)
DNA (681bp) protein (227aa)
TIGR00659 family protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BTD6_9FIRM
TIGR00659 family protein {ECO:0000313|EMBL:ETD17756.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Putative effector of murein hydrolase
L1_007_365G1_scaffold_858_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8797..9171)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BSH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17755.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Putative effector of murein hydrolase LrgA
L1_007_365G1_scaffold_858_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9443..10456
DNA (1014bp) protein (338aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRL7_9FIRM
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ETD17754.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L1_007_365G1_scaffold_858_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10469..11524
DNA (1056bp) protein (352aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRD0_9FIRM
L1_007_365G1_scaffold_858_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11682..12665)
DNA (984bp) protein (328aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EDY32224.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EDY32224.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
alpha-keto acid dehydrogenase (EC:1.1.1.-)
4-phosphoerythronate dehydrogenase n=2 Tax=Ruminococcus lactaris RepID=B5CR62_9FIRM
L1_007_365G1_scaffold_858_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12707..13666)
DNA (960bp) protein (320aa)
Cof-like hydrolase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR61_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EDY32223.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
HAD-superfamily hydrolase, subfamily IIB
L1_007_365G1_scaffold_858_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13805..14449)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32222.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted membrane protein
L1_007_365G1_scaffold_858_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14497..15585
DNA (1089bp) protein (363aa)
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EDY32221.1}; EC=3.5.-.- {ECO:0000313|EMBL:EDY32221.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR59_9FIRM
delta-lactam-biosynthetic de-N-acetylase
L1_007_365G1_scaffold_858_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15745..16731)
DNA (987bp) protein (329aa)
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:EDY32220.1}; EC=1.4.1.16 {ECO:0000313|EMBL:EDY32220.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
diaminopimelate dehydrogenase (EC:1.4.1.16)
Diaminopimelate dehydrogenase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR58_9FIRM
L1_007_365G1_scaffold_858_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16825..18843)
DNA (2019bp) protein (673aa)
Efflux ABC transporter, permease protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR57_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDY32219.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_365G1_scaffold_858_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18833..19600)
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CR56_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDY32218.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC-type antimicrobial peptide transport system, ATPase component
L1_007_365G1_scaffold_858_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19714..20754)
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BSG0_9FIRM
hypothetical protein
L1_007_365G1_scaffold_858_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20751..21476)
DNA (726bp) protein (242aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR54_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDY32216.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
two-component system OmpR family response regulator
L1_007_365G1_scaffold_858_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21486..22334)
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8BRC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17743.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L1_007_365G1_scaffold_858_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22349..23440)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CR52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32214.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L1_007_365G1_scaffold_858_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23457..24830)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BTC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17741.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Putative virion core protein (lumpy skin disease virus)
L1_007_365G1_scaffold_858_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24996..25607)
DNA (612bp) protein (204aa)
Pilin isopeptide linkage domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR49_9FIRM
Pilin isopeptide linkage domain protein {ECO:0000313|EMBL:EDY32211.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_365G1_scaffold_858_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25604..26380)
DNA (777bp) protein (259aa)
Sortase, SrtB family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR48_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:EDY32210.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
sortase, SrtB family
L1_007_365G1_scaffold_858_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26384..27436)
DNA (1053bp) protein (351aa)
Pilin isopeptide linkage domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR47_9FIRM
Pilin isopeptide linkage domain protein {ECO:0000313|EMBL:EDY32209.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Fimbrial structural subunit
L1_007_365G1_scaffold_858_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27620..28117)
DNA (498bp) protein (166aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=2 Tax=Ruminococcus lactaris RepID=B5CR46_9FIRM
L1_007_365G1_scaffold_858_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28136..29821)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32207.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L1_007_365G1_scaffold_858_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30111..31556)
DNA (1446bp) protein (482aa)
HTH domain protein n=2 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR43_9FIRM
HTH domain protein {ECO:0000313|EMBL:EDY32205.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
transcriptional antiterminator, BglG family
Displaying 30 items

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