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L1_007_365G1_scaffold_236

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_236_1
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1458)
DNA (1458bp) protein (486aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EDS05802.1}; EC=2.1.1.- {ECO:0000313|EMBL:EDS05802.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NI54_CLOSV
L1_007_365G1_scaffold_236_2
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1564..2505)
DNA (942bp) protein (314aa)
HDIG domain protein n=2 Tax=Clostridiales RepID=B0NI55_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35957.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
uncharacterized domain HDIG
L1_007_365G1_scaffold_236_3
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2530..3807)
DNA (1278bp) protein (426aa)
PDZ/DHR/GLGF domain protein n=2 Tax=Clostridiales RepID=B0NI56_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35958.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_007_365G1_scaffold_236_4
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3925..6300
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Endonuclease MutS2 n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NI57_CLOSV
MutS2 family protein
L1_007_365G1_scaffold_236_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6335..7039
DNA (705bp) protein (235aa)
Response regulator receiver domain protein n=2 Tax=Clostridiales RepID=B0NI58_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35960.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_365G1_scaffold_236_6
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7056..8462
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridiales RepID=B0NI59_CLOSV
Signal transduction histidine kinase
L1_007_365G1_scaffold_236_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9122..10324)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI60_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35962.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_007_365G1_scaffold_236_8
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10968..11327
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI63_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35964.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Predicted transcriptional regulators
L1_007_365G1_scaffold_236_9
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11310..12650)
DNA (1341bp) protein (447aa)
Replicative DNA helicase n=2 Tax=Clostridiales RepID=B0NI64_CLOSV
Replicative DNA helicase {ECO:0000313|EMBL:EGN35965.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
replicative DNA helicase
L1_007_365G1_scaffold_236_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12664..13113)
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NI65_CLOSV
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
LSU ribosomal protein L9P
L1_007_365G1_scaffold_236_11
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13115..15181)
DNA (2067bp) protein (689aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35967.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_007_365G1_scaffold_236_12
unknown

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comp(15142..15285)
DNA (144bp) protein (48aa)

This feature has no annotations

L1_007_365G1_scaffold_236_13
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15320..16339)
DNA (1020bp) protein (340aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDS05815.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EDS05815.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
UDP-glucose 4-epimerase n=2 Tax=Clostridiales RepID=B0NI67_CLOSV
UDP-glucose 4-epimerase
L1_007_365G1_scaffold_236_14
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16351..17469)
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35969.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_365G1_scaffold_236_15
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17469..18395)
DNA (927bp) protein (309aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI69_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35970.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
dTDP-glucose pyrophosphorylase
L1_007_365G1_scaffold_236_16
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18441..19325)
DNA (885bp) protein (295aa)
ABC transporter, permease protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NI70_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS05818.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
binding-protein-dependent transport system inner membrane protein
L1_007_365G1_scaffold_236_17
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19341..19883)
DNA (543bp) protein (181aa)
ABC transporter, permease protein n=2 Tax=Clostridiales RepID=B0NI71_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35972.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
binding-protein-dependent transport system inner membrane protein
L1_007_365G1_scaffold_236_18
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19920..20246)
DNA (327bp) protein (109aa)
ABC transporter, permease protein n=2 Tax=Clostridiales RepID=B0NI71_CLOSV
ABC transporter, permease protein {ECO:0000313|EMBL:EDS05819.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
binding-protein-dependent transport system inner membrane protein
L1_007_365G1_scaffold_236_19
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20356..21666)
DNA (1311bp) protein (437aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35973.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
extracellular solute-binding protein
L1_007_365G1_scaffold_236_20
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21875..22789
DNA (915bp) protein (305aa)
Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=B0NI73_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35974.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
AraC family transcriptional regulator
L1_007_365G1_scaffold_236_21
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22872..23606)
DNA (735bp) protein (245aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Glucosamine-6-phosphate deaminase n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMN5_9FIRM
glucosamine-6-phosphate deaminase
L1_007_365G1_scaffold_236_22
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23642..24286)
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI75_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35976.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_365G1_scaffold_236_23
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24502..26682
DNA (2181bp) protein (727aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=2 Tax=Clostridiales RepID=B0NI76_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35977.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_365G1_scaffold_236_24
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27017..27823)
DNA (807bp) protein (269aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI77_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35978.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Metal-dependent hydrolases of the beta-lactamase superfamily III
L1_007_365G1_scaffold_236_25
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27820..28713)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KMN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35979.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L1_007_365G1_scaffold_236_26
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28913..29179)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=3 Tax=Clostridiales RepID=B0NI80_CLOSV
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
SSU ribosomal protein S18P
L1_007_365G1_scaffold_236_27
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29237..29692)
DNA (456bp) protein (152aa)
Single-stranded DNA-binding protein n=2 Tax=Clostridiales RepID=B0NI81_CLOSV
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
single-strand binding protein
L1_007_365G1_scaffold_236_28
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29714..30001)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=2 Tax=Clostridiales RepID=B0NI82_CLOSV
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
SSU ribosomal protein S6P
L1_007_365G1_scaffold_236_29
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30132..30326)
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NI83_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35984.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L1_007_365G1_scaffold_236_30
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30323..31246)
DNA (924bp) protein (308aa)
Sortase, SrtB family n=2 Tax=Clostridiales RepID=B0NI84_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN35985.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
sortase, SrtB family
Displaying items 1-30 of 109 in total

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