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L1_007_365G1_scaffold_1380

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_1380_1
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(166..306)
DNA (141bp) protein (47aa)
Radical SAM domain protein n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GVK0_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDE30733.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
hypothetical protein
L1_007_365G1_scaffold_1380_2
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(984..1460)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=2 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AYW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80286.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L1_007_365G1_scaffold_1380_3
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1771..1902)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium OBRC5-5 RepID=K0XIS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG92114.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
binding-protein-dependent transport system inner membrane protein
L1_007_365G1_scaffold_1380_4
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1942..5007)
DNA (3066bp) protein (1022aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YRN9_9FIRM
Beta-galactosidase/beta-glucuronidase
L1_007_365G1_scaffold_1380_5
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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5226..6116
DNA (891bp) protein (297aa)
Putative lactose operon transcription activator n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VKD0_9FIRM
Putative lactose operon transcription activator {ECO:0000313|EMBL:CDC94724.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
AraC-type DNA-binding domain-containing proteins
L1_007_365G1_scaffold_1380_6
Lachnospiraceae oral taxon 107, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6232..7665)
DNA (1434bp) protein (478aa)
alpha-L-fucosidase (EC:3.2.1.51)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae oral taxon 107 str. F0167 RepID=F3AZC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG92108.1}; TaxID=575593 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae oral taxon 107 str. F0167.;"
L1_007_365G1_scaffold_1380_7
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(7726..9096)
DNA (1371bp) protein (457aa)
Putative sugar transporter n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VKC6_9FIRM
Putative sugar transporter {ECO:0000313|EMBL:CDC94719.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L1_007_365G1_scaffold_1380_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9341..10357)
DNA (1017bp) protein (339aa)
UDP-glucose-4-epimerase (EC:5.1.3.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I4A1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31837.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_1380_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10721..11287
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69361.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Protein of unknown function (DUF1393).
L1_007_365G1_scaffold_1380_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11440..11595)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32338.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
HipB; putative transcriptional regulator
L1_007_365G1_scaffold_1380_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11751..13136)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33088.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_1380_12
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13133..13690)
DNA (558bp) protein (186aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Blautia sp. CAG:237 RepID=R6L5Q3_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDB78839.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_365G1_scaffold_1380_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14041..14910)
DNA (870bp) protein (290aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I5Q6_9FIRM
L1_007_365G1_scaffold_1380_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14929..15753)
DNA (825bp) protein (275aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HQU4_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCY32085.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
transcriptional regulator, AraC family
L1_007_365G1_scaffold_1380_15
unknown

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comp(15737..16177)
DNA (441bp) protein (147aa)

This feature has no annotations

L1_007_365G1_scaffold_1380_16
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16164..16499)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HQS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32083.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_1380_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16463..17992)
DNA (1530bp) protein (510aa)
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J840_9FIRM
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EES78492.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Displaying 17 items

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