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L1_007_365G1_scaffold_389

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_389_1
unknown

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3..191
DNA (189bp) protein (63aa)

This feature has no annotations

L1_007_365G1_scaffold_389_2
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(333..1235)
DNA (903bp) protein (301aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HS29_9FIRM
L1_007_365G1_scaffold_389_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1474..4689)
DNA (3216bp) protein (1072aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDT7_9FIRM
L1_007_365G1_scaffold_389_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4689..5651)
DNA (963bp) protein (321aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NGZ7_9FIRM
L1_007_365G1_scaffold_389_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6190..6438
DNA (249bp) protein (83aa)
Helix-turn-helix n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTM7_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CCY33075.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Helix-turn-helix.
L1_007_365G1_scaffold_389_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6476..6940)
DNA (465bp) protein (155aa)
Lipoprotein signal peptidase {ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|SAAS:SAAS00112508};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HY88_9FIRM
peptidase A8 signal peptidase II
L1_007_365G1_scaffold_389_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6954..7478)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33073.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_389_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7586..9019)
DNA (1434bp) protein (478aa)
Endopeptidase Clp ATP-binding regulatory subunit (ClpX) n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I7Z6_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|SAAS:SAAS00063387}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L1_007_365G1_scaffold_389_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9184..10869)
DNA (1686bp) protein (562aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8J5_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCY33071.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_007_365G1_scaffold_389_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11086..12006)
DNA (921bp) protein (307aa)
Glycosyltransferase group 2 family protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTM2_9FIRM
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CCY33070.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Glycosyltransferases, probably involved in cell wall biogenesis
L1_007_365G1_scaffold_389_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12160..13548)
DNA (1389bp) protein (463aa)
Cell envelope-related function transcriptional attenuator common domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HY84_9FIRM
Cell envelope-related function transcriptional attenuator common domain {ECO:0000313|EMBL:CCY33069.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
cell envelope-related function transcriptional attenuator common domain
L1_007_365G1_scaffold_389_12
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13563..14996)
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33068.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Undecaprenyl-phosphate glucose phosphotransferase
L1_007_365G1_scaffold_389_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15176..16132)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76846.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L1_007_365G1_scaffold_389_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16142..18010)
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33066.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted glycosyltransferases
L1_007_365G1_scaffold_389_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18273..19526
DNA (1254bp) protein (418aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33065.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_389_16
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19590..22064)
DNA (2475bp) protein (825aa)
Predicted glycosyltransferases n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HY80_9FIRM
Predicted glycosyltransferases {ECO:0000313|EMBL:CCY33064.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted glycosyltransferases
L1_007_365G1_scaffold_389_17
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22066..23301)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33063.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Dimethyladenosine transferase (rRNA methylation)
L1_007_365G1_scaffold_389_18
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23298..24227)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Blautia RepID=R5BQX1_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG48561.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
Dimethyladenosine transferase (rRNA methylation)
L1_007_365G1_scaffold_389_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24234..25487)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I7Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33062.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L1_007_365G1_scaffold_389_20
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25606..26421)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8I8_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
L1_007_365G1_scaffold_389_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26432..26986)
DNA (555bp) protein (185aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3 5-epimerase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTL5_9FIRM
dTDP-4-dehydrorhamnose 3 5-epimerase {ECO:0000313|EMBL:CCY33060.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_389_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27167..28744)
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HY75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33059.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Putative cell wall binding repeat.
L1_007_365G1_scaffold_389_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29006..31591)
DNA (2586bp) protein (862aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030BE889
Uncharacterized protein {ECO:0000313|EMBL:EES76864.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
FOG: Glucan-binding domain (YG repeat)
L1_007_365G1_scaffold_389_24
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31624..31887)
DNA (264bp) protein (88aa)
Phosphocarrier HPr family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8I4_9FIRM
Phosphocarrier HPr family {ECO:0000313|EMBL:CCY33056.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Phosphotransferase System HPr (HPr) Family
L1_007_365G1_scaffold_389_25
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31965..33260)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33055.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_389_26
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33238..34125)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HY70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33054.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
conserved hypothetical protein TIGR00159
L1_007_365G1_scaffold_389_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34170..35288)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33053.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_389_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35285..35719)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I7Y1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33052.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_389_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35812..36435)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8I2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33051.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
amidophosphoribosyltransferase
L1_007_365G1_scaffold_389_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36449..38725)
DNA (2277bp) protein (759aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Helicase putative RecD/TraA family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HTK7_9FIRM
Displaying items 1-30 of 126 in total

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