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L1_007_365G1_scaffold_540

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_540_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..534)
DNA (534bp) protein (178aa)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVA4_9FIRM
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EGX70349.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
UDP-N-acetylglucosamine-2-epimerase
L1_007_365G1_scaffold_540_2
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(531..902)
DNA (372bp) protein (124aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETN5_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG37340.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
winged helix family two component transcriptional regulator
L1_007_365G1_scaffold_540_3
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1234..1467
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33806.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Small, acid-soluble spore proteins, alpha/beta type.
L1_007_365G1_scaffold_540_4
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1602..2333)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IA07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33807.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_540_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2327..3037)
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVE9_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY33808.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type multidrug transport system, ATPase component
L1_007_365G1_scaffold_540_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3054..3410)
DNA (357bp) protein (119aa)
Transcriptional regulator GntR family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I082_9FIRM
Transcriptional regulator GntR family {ECO:0000313|EMBL:CCY33809.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted transcriptional regulators
L1_007_365G1_scaffold_540_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3586..4836)
DNA (1251bp) protein (417aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAJ5_9FIRM
DNA polymerase IV {ECO:0000313|EMBL:CCY33816.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_540_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5051..6286)
DNA (1236bp) protein (412aa)
Galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVR0_9FIRM
Galactokinase {ECO:0000313|EMBL:CCY33820.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_540_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6593..7474
DNA (882bp) protein (294aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAK1_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCY33821.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
transcriptional regulator, AraC family
L1_007_365G1_scaffold_540_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7695..8234)
DNA (540bp) protein (180aa)
Ethanolamine utilization protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVH2_9FIRM
Ethanolamine utilization protein {ECO:0000313|EMBL:CCY33828.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Ethanolamine utilization protein
L1_007_365G1_scaffold_540_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8360..8788)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I099_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33829.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Ethanolamine utilization protein
L1_007_365G1_scaffold_540_12
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8800..9165)
DNA (366bp) protein (122aa)
Ethanolamine utilization protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVS0_9FIRM
Ethanolamine utilization protein {ECO:0000313|EMBL:CCY33830.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Ethanolamine utilization protein
L1_007_365G1_scaffold_540_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9530..10900
DNA (1371bp) protein (457aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAL5_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CCY33831.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
putative efflux protein, MATE family
L1_007_365G1_scaffold_540_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11067..12083)
DNA (1017bp) protein (339aa)
Zinc carboxypeptidase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IA35_9FIRM
Zinc carboxypeptidase {ECO:0000313|EMBL:CCY33832.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Zinc carboxypeptidase.
L1_007_365G1_scaffold_540_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12341..14626)
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33833.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_540_16
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14715..15965)
DNA (1251bp) protein (417aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I0A2_9FIRM
L1_007_365G1_scaffold_540_17
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15966..16526)
DNA (561bp) protein (187aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5 10-methenyltetrahydrofolate synthetase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVS4_9FIRM
L1_007_365G1_scaffold_540_18
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16504..16725)
DNA (222bp) protein (74aa)
UPF0291 protein BN729_02736 n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAM1_9FIRM
UPF0291 protein BN729_02736 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_540_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16810..17667)
DNA (858bp) protein (286aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IA40_9FIRM
L1_007_365G1_scaffold_540_20
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18011..19024)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33838.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Protein of unknown function (DUF3048).
L1_007_365G1_scaffold_540_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19245..19742)
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Endoribonuclease YbeY n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I0A6_9FIRM
conserved hypothetical protein TIGR00043
L1_007_365G1_scaffold_540_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19914..20933)
DNA (1020bp) protein (340aa)
PhoH family protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVT0_9FIRM
PhoH family protein {ECO:0000313|EMBL:CCY33840.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ybeZ; putative enzyme with nucleoside triphosphate hydrolase domain
L1_007_365G1_scaffold_540_23
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21010..22209)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32254.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Putative stage IV sporulation protein YqfD.
L1_007_365G1_scaffold_540_24
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22319..22585)
DNA (267bp) protein (89aa)
YabP family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HR74_9FIRM
YabP family {ECO:0000313|EMBL:CCY32253.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
YabP family.
L1_007_365G1_scaffold_540_25
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22660..23208)
DNA (549bp) protein (183aa)
Predicted metal-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I5G2_9FIRM
Predicted metal-binding protein {ECO:0000313|EMBL:CCY32252.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted metal-binding protein
L1_007_365G1_scaffold_540_26
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23288..24229)
DNA (942bp) protein (314aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
tRNA-dihydrouridine synthase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I635_9FIRM
tRNA-U20a,U20b-dihydrouridine synthase
L1_007_365G1_scaffold_540_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24640..25797
DNA (1158bp) protein (386aa)
Aminotransferase class I/II n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVU0_9FIRM
Aminotransferase class I/II {ECO:0000313|EMBL:CCY32249.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Aspartate/tyrosine/aromatic aminotransferase
L1_007_365G1_scaffold_540_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26038..26517)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HR70_9FIRM
conserved hypothetical protein TIGR00246
L1_007_365G1_scaffold_540_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26518..26820)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I5F9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32247.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_540_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26973..30134)
DNA (3162bp) protein (1054aa)
FtsK/SpoIIIE family protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I633_9FIRM
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:CCY32246.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
DNA translocase FtsK
Displaying items 1-30 of 45 in total

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