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L1_007_365G1_scaffold_712

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_712_1
unknown

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1..87
DNA (87bp) protein (29aa)

This feature has no annotations

L1_007_365G1_scaffold_712_2
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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198..884
DNA (687bp) protein (229aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HUV2_9FIRM
L1_007_365G1_scaffold_712_3
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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888..2507
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I9D8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33577.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L1_007_365G1_scaffold_712_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2684..6934)
DNA (4251bp) protein (1417aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CKC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78486.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
CoA-substrate-specific enzyme activase, putative
L1_007_365G1_scaffold_712_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7386..8543
DNA (1158bp) protein (386aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HZM2_9FIRM
L1_007_365G1_scaffold_712_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8661..8960
DNA (300bp) protein (100aa)
Protein translocase subunit yajC n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HUU9_9FIRM
Protein translocase subunit yajC {ECO:0000313|EMBL:CCY33573.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
protein translocase subunit yajC
L1_007_365G1_scaffold_712_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9200..10282
DNA (1083bp) protein (361aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I9D4_9FIRM
L1_007_365G1_scaffold_712_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10351..12024
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002EEB6BC
L1_007_365G1_scaffold_712_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12134..13810
DNA (1677bp) protein (559aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I188_9FIRM
L1_007_365G1_scaffold_712_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13807..14889
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWD7_9FIRM
L1_007_365G1_scaffold_712_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14889..16052
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IB20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34152.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_712_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16183..16281)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2L1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98245.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L1_007_365G1_scaffold_712_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16541..17515)
DNA (975bp) protein (325aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Sugar kinases ribokinase family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW13_9FIRM
Sugar kinases ribokinase family {ECO:0000313|EMBL:CCY33920.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_712_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17731..20013
DNA (2283bp) protein (761aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00081436}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00081436};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I0J4_9FIRM
L1_007_365G1_scaffold_712_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20396..20881)
DNA (486bp) protein (162aa)
Ureidoglycolate hydrolase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HS82_9FIRM
Ureidoglycolate hydrolase {ECO:0000313|EMBL:CCY32575.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Ureidoglycolate hydrolase.
L1_007_365G1_scaffold_712_16
unknown

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21083..21304
DNA (222bp) protein (74aa)

This feature has no annotations

L1_007_365G1_scaffold_712_17
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21503..22507
DNA (1005bp) protein (335aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVS7_9FIRM
L1_007_365G1_scaffold_712_18
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22504..23388
DNA (885bp) protein (295aa)
ABC-type spermidine/putrescine transport system permease component I n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAC5_9FIRM
ABC-type spermidine/putrescine transport system permease component I {ECO:0000313|EMBL:CCY33917.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_007_365G1_scaffold_712_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23385..24290
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33916.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type spermidine/putrescine transport system, permease component II
L1_007_365G1_scaffold_712_20
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24415..25458
DNA (1044bp) protein (348aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW06_9FIRM
L1_007_365G1_scaffold_712_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25458..26279
DNA (822bp) protein (274aa)
ABC-type spermidine/putrescine transport system permease component I n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I0I9_9FIRM
ABC-type spermidine/putrescine transport system permease component I {ECO:0000313|EMBL:CCY33914.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_007_365G1_scaffold_712_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26289..28136
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33913.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type spermidine/putrescine transport system, permease component II
L1_007_365G1_scaffold_712_23
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28210..29238
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33912.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Spermidine/putrescine-binding periplasmic protein
L1_007_365G1_scaffold_712_24
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29522..31228
DNA (1707bp) protein (569aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAV9_9FIRM
L1_007_365G1_scaffold_712_25
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31313..32620
DNA (1308bp) protein (436aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW01_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CCY33910.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_712_26
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32760..33641)
DNA (882bp) protein (294aa)
Methionine synthase I (Cobalamin-dependent) methyltransferase domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I0I3_9FIRM
Methionine synthase I (Cobalamin-dependent) methyltransferase domain {ECO:0000313|EMBL:CCY33909.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Methionine synthase I (cobalamin-dependent), methyltransferase domain
L1_007_365G1_scaffold_712_27
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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33956..35602
DNA (1647bp) protein (549aa)
Cell envelope-related function transcriptional attenuator common domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HVR2_9FIRM
Cell envelope-related function transcriptional attenuator common domain {ECO:0000313|EMBL:CCY33908.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
cell envelope-related function transcriptional attenuator common domain
L1_007_365G1_scaffold_712_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35781..36209
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33907.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_712_29
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36593..37735)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036BC7A5
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ERI96693.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Site-specific recombinase XerD
Displaying 29 items

View Taxonomy