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L1_007_365G1_scaffold_944

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_944_1
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(212..2107)
DNA (1896bp) protein (632aa)
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] (EC:2.2.1.6)
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase pyruvate dehydrogenase (Cytochrome) glyoxylate carboligase phosphonopyruvate decarboxylase] n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRE5_9FIRM
Thiamine pyrophosphate-requiring enzymes [acetolactate synthase pyruvate dehydrogenase (Cytochrome) glyoxylate carboligase phosphonopyruvate decarboxylase] {ECO:0000313|EMBL:CCY32305.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_944_2
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2104..3261)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F7069D
Uncharacterized protein {ECO:0000313|EMBL:CCY32097.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L1_007_365G1_scaffold_944_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3346..5625)
DNA (2280bp) protein (760aa)
LPS biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N909_9FIRM
LPS biosynthesis protein {ECO:0000313|EMBL:CCY98364.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
LPS biosynthesis protein
L1_007_365G1_scaffold_944_4
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5629..6996)
DNA (1368bp) protein (456aa)
Cytidyltransferase-related domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRB7_9FIRM
Cytidyltransferase-related domain {ECO:0000313|EMBL:CCY32303.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
cytidyltransferase-related domain
L1_007_365G1_scaffold_944_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7246..8415)
DNA (1170bp) protein (390aa)
Fucose 4-O-acetylase and related acetyltransferases n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I5L5_9FIRM
Fucose 4-O-acetylase and related acetyltransferases {ECO:0000313|EMBL:CCY32302.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Fucose 4-O-acetylase and related acetyltransferases
L1_007_365G1_scaffold_944_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8578..9465)
DNA (888bp) protein (296aa)
L-serine dehydratase iron-sulfur-dependent alpha subunit n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I682_9FIRM
L-serine dehydratase iron-sulfur-dependent alpha subunit {ECO:0000313|EMBL:CCY32301.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
sdhA; L-serine dehydratase, iron-sulfur-dependent subunit alpha
L1_007_365G1_scaffold_944_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9545..10204)
DNA (660bp) protein (220aa)
L-serine dehydratase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRE1_9FIRM
L-serine dehydratase {ECO:0000313|EMBL:CCY32300.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
serine dehydratase
L1_007_365G1_scaffold_944_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10536..10925
DNA (390bp) protein (130aa)
Glycerol-3-phosphate cytidylyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A790_9CLOT
Glycerol-3-phosphate cytidylyltransferase {ECO:0000313|EMBL:CCX37724.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
TagD; cytidylyltransferase
L1_007_365G1_scaffold_944_9
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11116..12615)
DNA (1500bp) protein (500aa)
Alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:CBL20471.1}; EC=3.2.1.55 {ECO:0000313|EMBL:CBL20471.1};; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
Alpha-L-arabinofuranosidase n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LKW0_9FIRM
L1_007_365G1_scaffold_944_10
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12780..13598
DNA (819bp) protein (273aa)
Transcriptional regulator, AraC family n=1 Tax=Blautia sp. KLE 1732 RepID=U2D1U4_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERI96759.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
AraC-type DNA-binding domain-containing proteins
L1_007_365G1_scaffold_944_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13603..14418)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77489.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Glycosyltransferases involved in cell wall biogenesis
L1_007_365G1_scaffold_944_12
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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14588..14971
DNA (384bp) protein (128aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BKX3_9FIRM
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CDD66409.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
prepilin-type N-terminal cleavage/methylation domain
L1_007_365G1_scaffold_944_13
unknown

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comp(15264..15515)
DNA (252bp) protein (84aa)

This feature has no annotations

L1_007_365G1_scaffold_944_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15768..16400)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8S5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33181.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ATPase (PilT family)
L1_007_365G1_scaffold_944_15
Adlercreutzia equolifaciens, Adlercreutzia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16620..16838)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B6C0A2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN77118.1}; TaxID=1384484 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia.;" source="Adlercreutzia equolifaciens DSM 19450.;"
L1_007_365G1_scaffold_944_16
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

Not on your lists

17402..18394
DNA (993bp) protein (331aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CFJ3_9FIRM
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CCX65329.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
prepilin-type N-terminal cleavage/methylation domain
L1_007_365G1_scaffold_944_17
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18577..19392)
DNA (816bp) protein (272aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Clostridium sp. CAG:43 RepID=R7B7J1_9CLOT
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CDD60007.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
prepilin-type N-terminal cleavage/methylation domain
L1_007_365G1_scaffold_944_18
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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comp(19621..20136)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R6R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ36298.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Putative transposase, YhgA-like.
L1_007_365G1_scaffold_944_19
unknown

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comp(20124..20237)
DNA (114bp) protein (38aa)

This feature has no annotations

L1_007_365G1_scaffold_944_20
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20606..22708)
DNA (2103bp) protein (701aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RMJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42475.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Fibronectin type III domain./Regulator of chromosome condensation (RCC1) repeat.
L1_007_365G1_scaffold_944_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22705..23133)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I6C3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32351.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_365G1_scaffold_944_22
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23491..24090)
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JJL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31745.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L1_007_365G1_scaffold_944_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24323..25534
DNA (1212bp) protein (404aa)
Transposase IS4 family protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CMU9_9FIRM
Transposase IS4 family protein {ECO:0000313|EMBL:CDD78718.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
transposase IS4 family protein
L1_007_365G1_scaffold_944_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25633..26037
DNA (405bp) protein (135aa)
Transposase IS4 family protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CLA0_9FIRM
Transposase IS4 family protein {ECO:0000313|EMBL:CDD78715.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
transposase IS4 family protein
L1_007_365G1_scaffold_944_25
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26328..27065)
DNA (738bp) protein (246aa)
Putative DNA protecting protein DprA n=1 Tax=Roseburia sp. CAG:100 RepID=R7R4U7_9FIRM
Putative DNA protecting protein DprA {ECO:0000313|EMBL:CDF45689.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
DNA processing SMF protein
L1_007_365G1_scaffold_944_26
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(27067..27333)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000363F5F0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL83061.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L1_007_365G1_scaffold_944_27

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comp(27308..27607)
DNA (300bp) protein (100aa)
Competence protein F DNA transformation protein comF {ECO:0000313|EMBL:ETJ18632.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_365G1_scaffold_944_28
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(27659..28261)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BTA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA64179.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
L1_007_365G1_scaffold_944_29
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

28606..31710
DNA (3105bp) protein (1035aa)
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BFY9_9FIRM
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:CDD64705.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
L1_007_365G1_scaffold_944_30
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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31714..32940
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Methanobrevibacter smithii RepID=UPI000366C9A5
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDB35850.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
glycosyl transferase GT2 family
Displaying 30 items

View Taxonomy