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L1_007_365G1_scaffold_285

Search features with annotation key words

Displaying items 1-30 of 84 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_285_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..596)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVT2_9FIRM
Peptidase {ECO:0000313|EMBL:KJF40540.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Putative peptidoglycan-binding domain-containing protein
L1_007_365G1_scaffold_285_2
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(600..3263)
DNA (2664bp) protein (888aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67496.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Putative peptidoglycan-binding domain-containing protein
L1_007_365G1_scaffold_285_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3447..4328
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67472.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Galactose mutarotase and related enzymes
L1_007_365G1_scaffold_285_4
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

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4524..5093
DNA (570bp) protein (190aa)
Isochorismatase family protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LF78_9FIRM
Isochorismatase hydrolase {ECO:0000313|EMBL:CDB31143.1}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
isochorismatase hydrolase
L1_007_365G1_scaffold_285_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5646..6725)
DNA (1080bp) protein (360aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP85_9FIRM
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EHL74818.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L1_007_365G1_scaffold_285_6
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6930..8471
DNA (1542bp) protein (514aa)
conserved hypothetical protein (EC:1.4.99.1)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6V6A3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC78342.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L1_007_365G1_scaffold_285_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8698..9897
DNA (1200bp) protein (400aa)
Predicted phosphohydrolases n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HSS2_9FIRM
Predicted phosphohydrolases {ECO:0000313|EMBL:CCY32795.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted phosphohydrolases
L1_007_365G1_scaffold_285_8
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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9926..11491
DNA (1566bp) protein (522aa)
Putative membrane protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MZV0_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDB99601.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
Predicted membrane protein
L1_007_365G1_scaffold_285_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11578..13014)
DNA (1437bp) protein (479aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWZ4_9FIRM
L1_007_365G1_scaffold_285_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13128..13355)
DNA (228bp) protein (76aa)
Acyl carrier protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWZ3_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
acyl carrier protein
L1_007_365G1_scaffold_285_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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13685..14524
DNA (840bp) protein (280aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNN0_9FIRM
L1_007_365G1_scaffold_285_12
unknown

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comp(14581..15078)
DNA (498bp) protein (166aa)

This feature has no annotations

L1_007_365G1_scaffold_285_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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15131..16327
DNA (1197bp) protein (399aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNX9_9FIRM
L1_007_365G1_scaffold_285_14
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16647..17006)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LVN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS62865.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
XRE family transcriptional regulator
L1_007_365G1_scaffold_285_15
unknown

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17192..18553
DNA (1362bp) protein (454aa)

This feature has no annotations

L1_007_365G1_scaffold_285_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18692..19753
DNA (1062bp) protein (354aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Galactose mutarotase and related enzymes (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNN4_9FIRM
L1_007_365G1_scaffold_285_17
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19754..20461
DNA (708bp) protein (236aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R5DZB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81336.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Nuclease-related domain./Topoisomerase DNA binding C4 zinc finger.
L1_007_365G1_scaffold_285_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20579..21199
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70573.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
TetR family transcriptional regulator
L1_007_365G1_scaffold_285_19
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21241..22125
DNA (885bp) protein (295aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=B0NEB4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN34047.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ABC-type multidrug transport system, ATPase component
L1_007_365G1_scaffold_285_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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22122..22919
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70571.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_365G1_scaffold_285_21
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23172..23834
DNA (663bp) protein (221aa)
Channel protein, hemolysin III family n=3 Tax=Lachnospiraceae RepID=C9L8Y0_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC07679.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
channel protein, hemolysin III family
L1_007_365G1_scaffold_285_22
unknown

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23843..24442
DNA (600bp) protein (200aa)

This feature has no annotations

L1_007_365G1_scaffold_285_23
unknown

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comp(24439..24891)
DNA (453bp) protein (151aa)

This feature has no annotations

L1_007_365G1_scaffold_285_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24895..25092)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64235.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
transcriptional regulator
L1_007_365G1_scaffold_285_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25253..26776)
DNA (1524bp) protein (508aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNN8_9FIRM
L1_007_365G1_scaffold_285_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26812..27579)
DNA (768bp) protein (256aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNN9_9FIRM
L1_007_365G1_scaffold_285_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27652..28872)
DNA (1221bp) protein (407aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNP0_9FIRM
L1_007_365G1_scaffold_285_28
unknown

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comp(29127..29624)
DNA (498bp) protein (166aa)

This feature has no annotations

L1_007_365G1_scaffold_285_29
unknown

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comp(29644..30435)
DNA (792bp) protein (264aa)

This feature has no annotations

L1_007_365G1_scaffold_285_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30571..31863)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77454.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 84 in total

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