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L1_007_365G1_scaffold_1014

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_365G1_scaffold_1014_1
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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150..1112
-----------------
DNA (963bp)
protein (321aa)
Alpha amylase catalytic region n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R121_9FIRM
Alpha amylase catalytic region {ECO:0000313|EMBL:CCZ34373.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
alpha amylase catalytic subunit
L1_007_365G1_scaffold_1014_2
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1622..2965
-----------------
DNA (1344bp)
protein (448aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00035EF8F0
Uncharacterized protein {ECO:0000313|EMBL:EHF04055.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L1_007_365G1_scaffold_1014_3
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(3026..4417)
-----------------
DNA (1392bp)
protein (464aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91975.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
putative transporter
L1_007_365G1_scaffold_1014_4
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(4441..5628)
-----------------
DNA (1188bp)
protein (396aa)
N-acyl-L-amino acid amidohydrolase n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V194_9FIRM
N-acyl-L-amino acid amidohydrolase {ECO:0000313|EMBL:CDC91973.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
peptidase M20D family protein
L1_007_365G1_scaffold_1014_5
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6049..6957
-----------------
DNA (909bp)
protein (303aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H6Q4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96934.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
transcriptional regulator, RpiR family
L1_007_365G1_scaffold_1014_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6917..7834
-----------------
DNA (918bp)
protein (306aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
N-acetylmuramic acid 6-phosphate etherase n=2 Tax=Clostridium RepID=N9Z469_9CLOT
RpiR family transcriptional regulator
L1_007_365G1_scaffold_1014_7
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7846..9276
-----------------
DNA (1431bp)
protein (477aa)
Extracellular solute-binding protein family 1 n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAT3_CLOSW
extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADL06130.1}; Flags: Precursor;; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L1_007_365G1_scaffold_1014_8
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9336..10214
-----------------
DNA (879bp)
protein (293aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAT2_CLOSW
binding-protein-dependent transport system inner membrane protein
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EXG83431.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L1_007_365G1_scaffold_1014_9
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10264..11127
-----------------
DNA (864bp)
protein (288aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAT1_CLOSW
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADL06128.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L1_007_365G1_scaffold_1014_10
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11141..12070
-----------------
DNA (930bp)
protein (310aa)
ATPase BadF/BadG/BcrA/BcrD type n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAT0_CLOSW
Putative N-acetylglucosamine kinase {ECO:0000313|EMBL:EXG83429.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
BadF/BadG/BcrA/BcrD type ATPase
L1_007_365G1_scaffold_1014_11
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12067..12915
-----------------
DNA (849bp)
protein (283aa)
ROK family protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS9_CLOSW
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:EXG83428.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ROK family protein
L1_007_365G1_scaffold_1014_12
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12912..14237
-----------------
DNA (1326bp)
protein (442aa)
Glycoside hydrolase family 4 n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS8_CLOSW
Diacetylchitobiose-6-phosphate hydrolase {ECO:0000313|EMBL:KEZ88017.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
glycoside hydrolase
L1_007_365G1_scaffold_1014_13
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14230..15204
-----------------
DNA (975bp)
protein (325aa)
GCN5-related N-acetyltransferase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS7_CLOSW
Acetyltransferase {ECO:0000313|EMBL:EXG83426.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
N-acetyltransferase GCN5
L1_007_365G1_scaffold_1014_14
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15230..15925
-----------------
DNA (696bp)
protein (232aa)
LmbE family protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS6_CLOSW
Putative LmbE-like protein {ECO:0000313|EMBL:EXG83425.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
LmbE family protein
L1_007_365G1_scaffold_1014_15
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15944..17086
-----------------
DNA (1143bp)
protein (381aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS5_CLOSW
Uncharacterized protein {ECO:0000313|EMBL:EXG83424.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein
L1_007_365G1_scaffold_1014_16
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17101..18618
-----------------
DNA (1518bp)
protein (506aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Beta-N-acetylhexosaminidase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9RAS4_CLOSW
L1_007_365G1_scaffold_1014_17
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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18720..19223
-----------------
DNA (504bp)
protein (168aa)
SEC-C domain protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RYX4_9FIRM
SEC-C domain protein {ECO:0000313|EMBL:CDC48286.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L1_007_365G1_scaffold_1014_18
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

19333..20094
-----------------
DNA (762bp)
protein (254aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RKJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48285.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L1_007_365G1_scaffold_1014_19
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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20446..22422
-----------------
DNA (1977bp)
protein (659aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHD4_9FIRM
L1_007_365G1_scaffold_1014_20
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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22502..22819
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RYW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC48281.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Domain of Unknown Function (DUF1540).
L1_007_365G1_scaffold_1014_21
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(22876..24231)
-----------------
DNA (1356bp)
protein (452aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RSF9_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Na+-dependent transporters of the SNF family
L1_007_365G1_scaffold_1014_22
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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24547..25164
-----------------
DNA (618bp)
protein (206aa)
Translation initiation factor IF-3 n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SNU1_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
bacterial translation initiation factor 3 (bIF-3)
L1_007_365G1_scaffold_1014_23
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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25195..25392
-----------------
DNA (198bp)
protein (66aa)
50S ribosomal protein L35 n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RKI9_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
LSU ribosomal protein L35P
L1_007_365G1_scaffold_1014_24
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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25450..25806
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L20 n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RHC5_9FIRM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
rplT; 50S ribosomal protein L20
Displaying 24 items

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