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L1_008_000G1_scaffold_2025

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_2025_1
unknown

Not on your lists


comp(3..71)
DNA (69bp) protein (23aa)
L1_008_000G1_scaffold_2025_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(94..543)
DNA (450bp) protein (150aa)
50S ribosomal protein L13 n=6 Tax=Bifidobacterium breve RepID=F6C7L0_BIFBA
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(831..2996)
DNA (2166bp) protein (722aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
4-alpha-glucanotransferase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZ24_BIFBR
4-alpha-glucanotransferase
L1_008_000G1_scaffold_2025_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3119..3802)
DNA (684bp) protein (228aa)
Leucine rich repeat variant n=6 Tax=Bifidobacterium breve RepID=F6C7L2_BIFBA
Hypothetical protein with leucine rich repeat variant
Uncharacterized protein {ECO:0000313|EMBL:AHJ21842.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3799..4440)
DNA (642bp) protein (214aa)
YigZ family protein n=6 Tax=Bifidobacterium breve RepID=F6C7L3_BIFBA
Thymidylate synthase
Thymidylate synthase {ECO:0000313|EMBL:AHJ21843.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4464..5480)
DNA (1017bp) protein (339aa)
pdxB_2; 4-phosphoerythronate dehydrogenase (EC:1.1.1.290)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:AEF27371.1}; EC=1.1.1.290 {ECO:0000313|EMBL:AEF27371.1};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
4-phosphoerythronate dehydrogenase n=2 Tax=Bifidobacterium breve RepID=F6C7L4_BIFBA
L1_008_000G1_scaffold_2025_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5491..6465)
DNA (975bp) protein (325aa)
Bacterial capsule synthesis protein n=2 Tax=Bifidobacterium breve RepID=D4BQN7_BIFBR
putative poly-gamma-glutamate biosynthesis protein
Putative poly-gamma-glutamate biosynthesis protein {ECO:0000313|EMBL:AHJ21845.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6836..8026)
DNA (1191bp) protein (397aa)
Glycosyl hydrolase, family 1 n=5 Tax=Bifidobacterium breve RepID=F6C7L5_BIFBA
Beta-glucosidase
Beta-glucosidase {ECO:0000313|EMBL:AHJ21846.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8057..8944)
DNA (888bp) protein (296aa)
ABC transporter, permease protein n=4 Tax=Bifidobacterium breve RepID=F6C7L6_BIFBA
Sugar ABC transporter, permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:AEF26699.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_2025_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8956..9873)
DNA (918bp) protein (306aa)
ABC transporter, permease protein n=6 Tax=Bifidobacterium breve RepID=F6C7L7_BIFBA
Permease protein of ABC transporter system
ABC transporter, permease protein {ECO:0000313|EMBL:EFE88529.1}; Sugar ABC transporter permease component {ECO:0000313|EMBL:BAR00701.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_2025_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9894..11189)
DNA (1296bp) protein (432aa)
Putative ABC transporter, substrate-binding protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZ16_BIFBR
Sugar-binding protein of ABC transporter system
Sugar-binding protein of ABC transporter system {ECO:0000313|EMBL:AHJ21849.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11374..12501)
DNA (1128bp) protein (376aa)
Transcriptional regulator, lacI type n=4 Tax=Bifidobacterium breve RepID=F9XYE3_BIFBU
Transcriptional regulator, lacI type
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFE88527.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_2025_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12647..13027)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XYE4_BIFBU
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ80232.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L1_008_000G1_scaffold_2025_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13262..13699)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AI14_BIFBR
Transporter, drug/metabolite exporter family
Uncharacterized protein {ECO:0000313|EMBL:EPD75999.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_2025_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13725..13961)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZNP1_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76000.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
threonine and homoserine efflux system
L1_008_000G1_scaffold_2025_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14044..15342
DNA (1299bp) protein (433aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
DNA polymerase IV n=3 Tax=Bifidobacterium breve RepID=D4BQM6_BIFBR
DNA polymerase IV
L1_008_000G1_scaffold_2025_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15343..16530)
DNA (1188bp) protein (396aa)
Aminotransferase n=3 Tax=Bifidobacterium breve RepID=F9XYE6_BIFBU
Aminotransferase
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:ERI86777.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_2025_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16623..16943)
DNA (321bp) protein (107aa)
4Fe-4S binding domain protein n=6 Tax=Bifidobacterium breve RepID=F6C7M3_BIFBA
Ferredoxin
4Fe-4S binding domain protein {ECO:0000313|EMBL:AEF27861.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L1_008_000G1_scaffold_2025_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17008..18534)
DNA (1527bp) protein (509aa)
amino acid permease n=1 Tax=Bifidobacterium breve RepID=UPI0002EECB2C
Amino acid permease
Amino acid permease {ECO:0000313|EMBL:EFE88518.1}; Amino acid transport protein {ECO:0000313|EMBL:BAR00712.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L1_008_000G1_scaffold_2025_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18696..19919)
DNA (1224bp) protein (408aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQM2_BIFBR
UDP-N-acetylenolpyruvoylglucosamine reductase
L1_008_000G1_scaffold_2025_21
Bifidobacterium reuteri, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20044..20211)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=25 Tax=Bifidobacterium RepID=RL33_BIFLO
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1437610 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium reuteri DSM 23975.;"
L1_008_000G1_scaffold_2025_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20769..21062)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=7 Tax=Bifidobacterium breve RepID=F9XYF1_BIFBU
10 kDa chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_2025_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21219..22418)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=D4BQL8_BIFBR
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76008.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L1_008_000G1_scaffold_2025_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22470..23135)
DNA (666bp) protein (222aa)
Acetyltransferase, GNAT family n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQL7_BIFBR
Ribosomal-protein-S5-alanine acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERI86770.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_2025_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23151..23756
DNA (606bp) protein (202aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZNQ2_BIFBR
5-formyltetrahydrofolate cyclo-ligase
L1_008_000G1_scaffold_2025_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24227..24793
DNA (567bp) protein (189aa)
SAF domain protein n=3 Tax=Bifidobacterium breve RepID=F6C7N2_BIFBA
putative secreted protein with Flp pilus assembly protein CpaB domain
Putative secreted protein with Flp pilus assembly protein CpaB domain {ECO:0000313|EMBL:AHJ21864.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25033..25233)
DNA (201bp) protein (67aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=H3KZ00_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY33304.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L1_008_000G1_scaffold_2025_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25236..28856)
DNA (3621bp) protein (1207aa)
helicase n=1 Tax=Bifidobacterium breve RepID=UPI0002EB4884
DNA and RNA helicase related protein
Uncharacterized protein {ECO:0000313|EMBL:ERI86842.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L1_008_000G1_scaffold_2025_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28865..30175)
DNA (1311bp) protein (437aa)
signal peptide protein n=1 Tax=Bifidobacterium breve RepID=UPI0002F4E7A6
Hypothetical protein with FHA domain
Uncharacterized protein {ECO:0000313|EMBL:AHJ21866.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L1_008_000G1_scaffold_2025_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(30434..30769)
DNA (336bp) protein (112aa)
50S ribosomal protein L7/L12 n=6 Tax=Bifidobacterium breve RepID=F6C7N6_BIFBA
LSU ribosomal protein L12P (L7/L12)
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Displaying items 1-30 of 31 in total

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