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L1_008_000G1_scaffold_1378

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_1378_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(172..1029)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UE60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67177.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
KilA-N domain-containing protein
L1_008_000G1_scaffold_1378_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1013..1303)
DNA (291bp) protein (97aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U7P2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43693.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L1_008_000G1_scaffold_1378_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1617..1841)
DNA (225bp) protein (75aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TND8_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCZ67175.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_1378_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1795..2955)
DNA (1161bp) protein (387aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TND8_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCZ67175.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L1_008_000G1_scaffold_1378_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3030..3971)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TV57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67174.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
uncharacterized domain HDIG
L1_008_000G1_scaffold_1378_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4006..5298)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67173.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L1_008_000G1_scaffold_1378_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5426..7801
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Endonuclease MutS2 n=2 Tax=Lachnospiraceae RepID=F7JTL9_9FIRM
MutS2 family protein
L1_008_000G1_scaffold_1378_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7827..8528
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=4 Tax=Clostridiales RepID=A7B167_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17983.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000G1_scaffold_1378_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8548..9951
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TND4_9FIRM
Signal transduction histidine kinase
L1_008_000G1_scaffold_1378_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10215..10637)
DNA (423bp) protein (141aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN31_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CCZ67168.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
low molecular weight phosphotyrosine phosphatase family protein
L1_008_000G1_scaffold_1378_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10722..11735)
DNA (1014bp) protein (338aa)
Putative permease n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B163_RUMGN
Putative permease {ECO:0000313|EMBL:EDN77985.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
permease
L1_008_000G1_scaffold_1378_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11816..12118)
DNA (303bp) protein (101aa)
Transcriptional regulator, ArsR family n=2 Tax=Clostridiales RepID=A7B162_RUMGN
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CCZ67166.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ArsR family transcriptional regulator
L1_008_000G1_scaffold_1378_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12215..12814)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B161_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77983.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted metal-dependent phosphoesterases (PHP family)
L1_008_000G1_scaffold_1378_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12829..13989)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B160_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77982.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L1_008_000G1_scaffold_1378_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14286..14456
DNA (171bp) protein (57aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TN26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43702.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
L1_008_000G1_scaffold_1378_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14664..15314
DNA (651bp) protein (217aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridiales RepID=A7B159_RUMGN
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCZ67162.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted transcriptional regulators
L1_008_000G1_scaffold_1378_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15305..16648)
DNA (1344bp) protein (448aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=4 Tax=Clostridiales RepID=A7B158_RUMGN
Replicative DNA helicase {ECO:0000313|EMBL:EGN43704.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L1_008_000G1_scaffold_1378_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16664..17110)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=4 Tax=Clostridiales RepID=A7B157_RUMGN
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LSU ribosomal protein L9P
L1_008_000G1_scaffold_1378_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17112..19151)
DNA (2040bp) protein (680aa)
DHHA1 domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B156_RUMGN
DHHA1 domain protein {ECO:0000313|EMBL:EDN77978.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_008_000G1_scaffold_1378_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19250..20452)
DNA (1203bp) protein (401aa)
Putative ATP synthase F0, A subunit n=2 Tax=Clostridiales RepID=A7B155_RUMGN
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CCZ67158.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted permease
L1_008_000G1_scaffold_1378_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20612..20878)
DNA (267bp) protein (89aa)
30S ribosomal protein S18 n=4 Tax=Clostridiales RepID=A7B154_RUMGN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
SSU ribosomal protein S18P
L1_008_000G1_scaffold_1378_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20918..21343)
DNA (426bp) protein (142aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridiales RepID=A7B153_RUMGN
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
single-strand binding protein
L1_008_000G1_scaffold_1378_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21360..21770)
DNA (411bp) protein (137aa)
30S ribosomal protein S6 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNC1_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
SSU ribosomal protein S6P
L1_008_000G1_scaffold_1378_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21767..21955)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B151_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ67154.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L1_008_000G1_scaffold_1378_25
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21959..22747)
DNA (789bp) protein (263aa)
SrtB family sortase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN17_9FIRM
SrtB family sortase {ECO:0000313|EMBL:CCZ67153.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
sortase, SrtB family
L1_008_000G1_scaffold_1378_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22784..23419)
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSE4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN42496.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Uncharacterised ACR, YkgG family COG1556.
L1_008_000G1_scaffold_1378_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23401..24312)
DNA (912bp) protein (304aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5U7L5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42497.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
HAD-superfamily hydrolase, subfamily IIB
L1_008_000G1_scaffold_1378_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24450..25964)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B147_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77969.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ATPase family associated with various cellular activities (AAA).
L1_008_000G1_scaffold_1378_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25955..27283)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TV34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67149.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metallopeptidase (DUF2201).
L1_008_000G1_scaffold_1378_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27309..28169)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67148.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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