ggKbase home page

L1_008_000G1_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 228 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_42_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

473..1336
DNA (864bp) protein (288aa)
Transcriptional regulator, LysR family n=2 Tax=Pseudomonas RepID=I2BW87_PSEFL
LysR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AFJ58520.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1395..2399
DNA (1005bp) protein (335aa)
Sugar binding transcriptional regulator, LacI family n=3 Tax=Pseudomonas RepID=I2BZ99_PSEFL
sugar binding transcriptional regulator, LacI family
Uncharacterized protein {ECO:0000313|EMBL:AFJ59582.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_3
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2396..3121)
DNA (726bp) protein (242aa)
Short chain dehydrogenase/reductase family protein n=3 Tax=Pseudomonas RepID=I2BXJ8_PSEFL
short chain dehydrogenase/reductase family protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_4
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3260..4792)
DNA (1533bp) protein (511aa)
Putative gluconokinase n=1 Tax=Pseudomonas sp. CF150 RepID=S6KUC9_9PSED
FGGY family carbohydrate kinase
Uncharacterized protein {ECO:0000313|EMBL:AFJ56437.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4794..5873)
DNA (1080bp) protein (360aa)
Alcohol dehydrogenase GroES-like domain/oxidoreductase, zinc-binding dehydrogenase family n=3 Tax=Pseudomonas RepID=I2BSK4_PSEFL
alcohol dehydrogenase GroES-like domain/oxidoreductase, zinc-binding dehydrogenase family
Uncharacterized protein {ECO:0000313|EMBL:AFJ57237.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5899..6891)
DNA (993bp) protein (331aa)
rbsC2; ribose ABC transporter permease (EC:3.6.3.17)
RbsC2 protein {ECO:0000313|EMBL:AFJ55112.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AFJ55112.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Ribose ABC transporter, permease protein n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BLH9_PSEFL
L1_008_000G1_scaffold_42_7
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6857..8365)
DNA (1509bp) protein (503aa)
rbsA2; ribose ABC transporter ATP-binding protein (EC:3.6.3.17)
RbsA2 protein {ECO:0000313|EMBL:AFJ55360.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AFJ55360.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Putative sugar transporter ATP-binding protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6I560_9PSED
L1_008_000G1_scaffold_42_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8429..9352)
DNA (924bp) protein (308aa)
rbsB2; ribose ABC transporter periplasmic ribose-binding protein (EC:3.6.3.17)
RbsB2 protein {ECO:0000313|EMBL:AFJ58616.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AFJ58616.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
Ribose ABC transporter, periplasmic ribose-binding protein n=2 Tax=Pseudomonas RepID=I2BWI3_PSEFL
L1_008_000G1_scaffold_42_9
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9647..10348
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6KUD1_9PSED
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_10
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10354..11802)
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6KKP6_9PSED
lipoprotein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11970..13034)
DNA (1065bp) protein (355aa)
Putative lipoprotein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6GSJ3_9PSED
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:AFJ59051.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13024..15486)
DNA (2463bp) protein (821aa)
Putative ABC transporter membrane protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6GR92_9PSED
ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:AFJ56417.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15488..16273)
DNA (786bp) protein (262aa)
ABC transporter, ATP-binding protein n=1 Tax=Pseudomonas fluorescens WH6 RepID=E2XUS9_PSEFL
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFQ62708.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens WH6.;"
ABC transporter ATP-binding protein
L1_008_000G1_scaffold_42_14
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16440..17111
DNA (672bp) protein (224aa)
Ais protein n=2 Tax=Pseudomonas RepID=S6HUG0_9PSED
phosphoglycerate mutase family protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_15
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17293..18948
DNA (1656bp) protein (552aa)
arnT_2; undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (EC:2.-.-.-)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6I548_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_16
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18977..20494
DNA (1518bp) protein (506aa)
dolichyl-phosphate-mannose-protein mannosyltransferase (EC:2.4.1.109)
Putative 4-amino-4-deoxy-l-arabinose lipid A transferase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6GSI9_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_17
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21292..22089
DNA (798bp) protein (266aa)
Putative LuxR family regulatory protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6KUD6_9PSED
LuxR family transcriptional regulator
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_18
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22103..22957)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BXS1_PSEFL
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22995..24125)
DNA (1131bp) protein (377aa)
Putative type III secretion effector protein n=1 Tax=Pseudomonas fluorescens SS101 RepID=I4KD95_PSEFL
type III secretion effector protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ58548.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_20
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24337..25197)
DNA (861bp) protein (287aa)
4-hydroxyphenylacetate catabolism regulatory protein HpaA n=2 Tax=Pseudomonas RepID=I2BUH8_PSEFL
hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA
HpaA protein {ECO:0000313|EMBL:AFJ57911.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25326..25991
DNA (666bp) protein (222aa)
hpaG_1; 4-hydroxyphenylacetate degradation isomerase/decarboxylase domain protein (EC:4.1.1.68 5.3.3.10)
HpaG_1 protein {ECO:0000313|EMBL:AFJ57412.1}; EC=4.1.1.68 {ECO:0000313|EMBL:AFJ57412.1};; EC=5.3.3.10 {ECO:0000313|EMBL:AFJ57412.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
4-hydroxyphenylacetate degradation isomerase/decarboxylase domain protein n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BT29_PSEFL
L1_008_000G1_scaffold_42_22
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25988..26758
DNA (771bp) protein (257aa)
hpaG_2; 4-hydroxyphenylacetate degradation isomerase/decarboxylase domain protein (EC:4.1.1.68 5.3.3.10)
Putative 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6HUF1_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_23
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26764..28224
DNA (1461bp) protein (487aa)
hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC:1.2.1.60)
HpaE protein {ECO:0000313|EMBL:AFJ54636.1}; EC=1.2.1.60 {ECO:0000313|EMBL:AFJ54636.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BK53_PSEFL
L1_008_000G1_scaffold_42_24
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28379..29236
DNA (858bp) protein (286aa)
hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC:1.13.11.15)
HpaD protein {ECO:0000313|EMBL:AFJ59030.1}; EC=1.13.11.15 {ECO:0000313|EMBL:AFJ59030.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
3,4-dihydroxyphenylacetate 2,3-dioxygenase n=2 Tax=Pseudomonas RepID=I2BXP7_PSEFL
L1_008_000G1_scaffold_42_25
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29252..29644
DNA (393bp) protein (131aa)
hpcD_1; 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
HpcD_1 protein {ECO:0000313|EMBL:AFJ57396.1}; EC=5.3.3.10 {ECO:0000313|EMBL:AFJ57396.1};; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
5-carboxymethyl-2-hydroxymuconate delta isomerase n=3 Tax=Pseudomonas RepID=I2BT13_PSEFL
L1_008_000G1_scaffold_42_26
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29684..30988
DNA (1305bp) protein (435aa)
Putative permease transmembrane protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6JA08_9PSED
major facilitator family transporter
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_27
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31000..31803
DNA (804bp) protein (268aa)
hpaH; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.2.1.-)
2-oxo-hept-3-ene-1,7-dioate hydratase n=1 Tax=Pseudomonas sp. CFT9 RepID=S6HUE6_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_28
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31820..32620
DNA (801bp) protein (267aa)
hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=2 Tax=Pseudomonas RepID=S6I532_9PSED
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
L1_008_000G1_scaffold_42_29
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32683..33048)
DNA (366bp) protein (122aa)
Homoprotocatechuate degradation operon regulator HpaR n=3 Tax=Pseudomonas RepID=I2BS72_PSEFL
hpaR; homoprotocatechuate degradation operon regulator HpaR
HpaR protein {ECO:0000313|EMBL:AFJ57105.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506.;"
L1_008_000G1_scaffold_42_30
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33313..34611
DNA (1299bp) protein (433aa)
Putative oxidoreductase n=1 Tax=Pseudomonas sp. CF150 RepID=S6J7A3_9PSED
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
Displaying items 1-30 of 228 in total

View Taxonomy