ggKbase home page

L1_008_000G1_scaffold_47

Search features with annotation key words

Displaying items 61-90 of 201 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_47_61
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56518..57492
DNA (975bp) protein (325aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:EEA83805.1}; EC=4.3.1.12 {ECO:0000313|EMBL:EEA83805.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ornithine cyclodeaminase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJJ3_9CLOT
ornithine cyclodeaminase
L1_008_000G1_scaffold_47_62
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57563..57940
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PMA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24685.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
endoribonuclease L-PSP, putative
L1_008_000G1_scaffold_47_63
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

57954..58793
DNA (840bp) protein (280aa)
Nucleotide-binding protein n=2 Tax=Clostridium RepID=B6FJJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24688.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPases involved in chromosome partitioning
L1_008_000G1_scaffold_47_64
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58945..60285
DNA (1341bp) protein (447aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PMA7_9CLOT
Putative DNA modification/repair radical SAM protein {ECO:0000313|EMBL:EEA83802.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L1_008_000G1_scaffold_47_65
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60299..61066
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6Q1V7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24691.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_47_66
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

61174..61401
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PK31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24693.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_47_67
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

61514..63886
DNA (2373bp) protein (791aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q1W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24696.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Rad3-related DNA helicases
L1_008_000G1_scaffold_47_68
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63892..64776)
DNA (885bp) protein (295aa)
LysR substrate binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJI6_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEA83798.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulator
L1_008_000G1_scaffold_47_69
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64876..65574
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24704.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
integral membrane protein
L1_008_000G1_scaffold_47_70
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

65664..69419
DNA (3756bp) protein (1252aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:EEA83808.1}; EC=6.3.5.3 {ECO:0000313|EMBL:EEA83808.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJI3_9CLOT
L1_008_000G1_scaffold_47_71
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

69534..70940
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMC4_9CLOT
integral membrane sensor signal transduction histidine kinase
L1_008_000G1_scaffold_47_72
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

70945..71643
DNA (699bp) protein (233aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FJI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24711.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
winged helix family two component transcriptional regulator
L1_008_000G1_scaffold_47_73
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

71806..72000
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24713.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_47_74
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

71963..72082
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24715.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_47_75
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

72088..73098
DNA (1011bp) protein (337aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase A chain n=3 Tax=Clostridium RepID=R6PVD9_9CLOT
potassium-transporting ATPase subunit A
L1_008_000G1_scaffold_47_76
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

73183..73815
DNA (633bp) protein (211aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase A chain n=3 Tax=Clostridium RepID=R6PVD9_9CLOT
hypothetical protein
L1_008_000G1_scaffold_47_77
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

73843..75897
DNA (2055bp) protein (685aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase B chain n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q1Y1_9CLOT
potassium-transporting ATPase subunit B
L1_008_000G1_scaffold_47_78
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

75911..76555
DNA (645bp) protein (215aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase C chain n=2 Tax=Clostridium RepID=B6FJH4_9CLOT
potassium-transporting ATPase C chain
L1_008_000G1_scaffold_47_79
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

76556..78550
DNA (1995bp) protein (665aa)
Universal stress family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJH3_9CLOT
Universal stress family protein {ECO:0000313|EMBL:EEA83824.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
kdpD; osmosensitive K+ channel sensor histidine kinase
L1_008_000G1_scaffold_47_80
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

78597..80141
DNA (1545bp) protein (515aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FJH2_9CLOT
histidine kinase
L1_008_000G1_scaffold_47_81
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

80134..80835
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FJH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24771.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_008_000G1_scaffold_47_82
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(80825..81469)
DNA (645bp) protein (215aa)
TrkA N-terminal domain protein n=2 Tax=Clostridium RepID=B6FJH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24772.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
K+ transport systems, NAD-binding component
L1_008_000G1_scaffold_47_83
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(81482..82564)
DNA (1083bp) protein (361aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
Potassium uptake protein, TrkH family n=2 Tax=Clostridium RepID=B6FJG9_9CLOT
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EEA83820.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L1_008_000G1_scaffold_47_84
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

83047..83157
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PKA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24778.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_47_85
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

83279..85183
DNA (1905bp) protein (635aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PVJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24779.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_47_86
unknown

Not on your lists

85203..85331
DNA (129bp) protein (43aa)

This feature has no annotations

L1_008_000G1_scaffold_47_87
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85280..85645
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24780.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_47_88
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85638..85991
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q233_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24781.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_47_89
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

86094..87428
DNA (1335bp) protein (445aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QS67_9CLOT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_47_90
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

88078..88641
DNA (564bp) protein (188aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Clostridium RepID=B6FJG3_9CLOT
Displaying items 61-90 of 201 in total

View Taxonomy