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L1_008_000G1_scaffold_99

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_99_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(75..812)
DNA (738bp) protein (246aa)
PHP domain protein n=2 Tax=Clostridium RepID=B6FIT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22371.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Histidinol phosphatase and related hydrolases of the PHP family
L1_008_000G1_scaffold_99_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

903..1103
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA84050.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000G1_scaffold_99_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1187..2230
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22373.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L1_008_000G1_scaffold_99_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2299..2949)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PND7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22374.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2969..4774)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFK5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22375.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Alcohol acetyltransferase.
L1_008_000G1_scaffold_99_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4778..5695)
DNA (918bp) protein (306aa)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FIU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22376.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alpha/beta hydrolase
L1_008_000G1_scaffold_99_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5794..7185)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22377.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Permeases
L1_008_000G1_scaffold_99_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7345..8967)
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDI0_9CLOT
L1_008_000G1_scaffold_99_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8996..9253)
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=2 Tax=Clostridium RepID=B6FIU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22379.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphotransferase system, phosphocarrier protein HPr
L1_008_000G1_scaffold_99_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9320..11029)
DNA (1710bp) protein (570aa)
fruA; PTS system, fructose subfamily, IIA component domain protein (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22380.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11026..11244)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22381.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11257..12177)
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK92_9CLOT
L1_008_000G1_scaffold_99_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12174..12926)
DNA (753bp) protein (251aa)
Transcriptional regulator, DeoR family n=2 Tax=Clostridium RepID=B6FIU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22383.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_008_000G1_scaffold_99_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13102..14034)
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=2 Tax=Clostridium RepID=B6FIV0_9CLOT
L1_008_000G1_scaffold_99_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14049..14483)
DNA (435bp) protein (145aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FIV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22385.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
BadM/Rrf2 family transcriptional regulator
L1_008_000G1_scaffold_99_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14540..14968)
DNA (429bp) protein (143aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FIV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22386.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Iron-sulfur cluster regulator IscR
L1_008_000G1_scaffold_99_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15134..15334
DNA (201bp) protein (67aa)
Cold-shock DNA-binding domain protein n=2 Tax=Clostridium RepID=B6FIV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22387.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cspD1; cold-shock protein D1
L1_008_000G1_scaffold_99_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15480..21935)
DNA (6456bp) protein (2152aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FIV4_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA84066.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sialidase-like protein
L1_008_000G1_scaffold_99_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22223..23350)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22388.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Peptidoglycan-binding domain 1 protein
L1_008_000G1_scaffold_99_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23403..28127)
DNA (4725bp) protein (1575aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22389.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28324..28755)
DNA (432bp) protein (144aa)
ACT domain protein n=2 Tax=Clostridium RepID=B6FIV9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22390.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
amino acid-binding ACT domain-containing protein
L1_008_000G1_scaffold_99_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28769..30085)
DNA (1317bp) protein (439aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phenylacetate--CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV58_9CLOT
L1_008_000G1_scaffold_99_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30101..30520)
DNA (420bp) protein (140aa)
ACT domain protein n=2 Tax=Clostridium RepID=B6FIW1_9CLOT
ACT domain protein {ECO:0000313|EMBL:EEA84031.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
amino acid-binding ACT domain-containing protein
L1_008_000G1_scaffold_99_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30531..31100)
DNA (570bp) protein (190aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit beta n=2 Tax=Clostridium RepID=B6FIW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22393.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31100..32857)
DNA (1758bp) protein (586aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Indolepyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNF9_9CLOT
indolepyruvate ferredoxin oxidoreductase subunit alpha
L1_008_000G1_scaffold_99_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32859..34169)
DNA (1311bp) protein (437aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phenylacetate--CoA ligase (EC:6.2.1.30)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FIW5_9CLOT
L1_008_000G1_scaffold_99_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34319..38794)
DNA (4476bp) protein (1492aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA polymerase III polC-type n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV65_9CLOT
DNA polymerase III subunit alpha
L1_008_000G1_scaffold_99_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38810..39895)
DNA (1086bp) protein (362aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridium RepID=R6QKA5_9CLOT
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L1_008_000G1_scaffold_99_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39973..40434)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PDK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22398.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_99_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40620..40979
DNA (360bp) protein (120aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridium RepID=B6FIX0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA83997.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted transcriptional regulator
Displaying items 1-30 of 117 in total

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