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L1_008_000G1_scaffold_144

Search features with annotation key words

Displaying items 211-240 of 265 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_144_211
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(228353..231919)
DNA (3567bp) protein (1189aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 /; Bd1).;"
dnaE; DnaE DNA polymerase III alpha subunit (EC:2.7.7.7)
DnaE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q5G4_BIFDB
L1_008_000G1_scaffold_144_212
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

232190..232429
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5B5_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42290.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
hypothetical protein
L1_008_000G1_scaffold_144_213
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(232399..233337)
DNA (939bp) protein (313aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Ribosomal large subunit pseudouridine synthase D n=4 Tax=Bifidobacterium dentium RepID=D2Q5G6_BIFDB
ribosomal large subunit pseudouridine synthase D
L1_008_000G1_scaffold_144_214
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(233334..233861)
DNA (528bp) protein (176aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
Lipoprotein signal peptidase n=4 Tax=Bifidobacterium dentium RepID=D2Q5G7_BIFDB
L1_008_000G1_scaffold_144_215
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(233883..235349)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S742_9BIFI
DivIVA protein {ECO:0000313|EMBL:ETO95706.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
chromosome segregation ATPase
L1_008_000G1_scaffold_144_216
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(235457..235738)
DNA (282bp) protein (94aa)
Hemolysin-like protein n=4 Tax=Bifidobacterium dentium RepID=D2Q5G9_BIFDB
hemolysin-like protein
YGGT family protein {ECO:0000313|EMBL:ETO95696.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_144_217
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(235853..236338)
DNA (486bp) protein (162aa)
Cell division protein SepF n=4 Tax=Bifidobacterium dentium RepID=D2Q5H0_BIFDB
sepF; cell division protein SepF
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_144_218
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(236369..237610)
DNA (1242bp) protein (414aa)
Cell division protein FtsZ n=2 Tax=Bifidobacterium dentium RepID=B1S739_9BIFI
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ftsZ; cell division protein FtsZ
L1_008_000G1_scaffold_144_219
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(237762..238991)
DNA (1230bp) protein (410aa)
TIM-barrel protein, nifR3 family n=2 Tax=Bifidobacterium dentium RepID=E0Q5A8_9BIFI
TIM-barrel protein, nifR3 family {ECO:0000313|EMBL:EFM42283.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Putative TIM-barrel protein, NifR3-like protein
L1_008_000G1_scaffold_144_220
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(239001..240476)
DNA (1476bp) protein (492aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Glycine--tRNA ligase n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NBK1_9BIFI
glycine-tRNA synthetase subunit beta
L1_008_000G1_scaffold_144_221
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(240709..241569)
DNA (861bp) protein (287aa)
aldo/keto reductase family (EC:1.1.1.64)
Aldo/keto reductase family n=2 Tax=Bifidobacterium dentium RepID=D2Q5H4_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27509.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_144_222
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

241713..242135
DNA (423bp) protein (141aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium dentium RepID=D2Q5H5_BIFDB
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EFM42280.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
MerR family transcriptional regulator
L1_008_000G1_scaffold_144_223
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

242299..243207
DNA (909bp) protein (303aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
thiM; ThiM Hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=2 Tax=Bifidobacterium dentium RepID=E1NBJ8_9BIFI
L1_008_000G1_scaffold_144_224
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

243379..245946
DNA (2568bp) protein (856aa)
Phosphomethylpyrimidine synthase {ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|SAAS:SAAS00007809};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
thiC; thiamine biosynthesis protein ThiC (EC:2.5.1.3)
Thiamine biosynthesis protein ThiC n=2 Tax=Bifidobacterium dentium RepID=E0Q5A3_9BIFI
L1_008_000G1_scaffold_144_225
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

246034..246876
DNA (843bp) protein (281aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFM42277.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFM42277.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
thiD; ThiD phosphomethylpyrimidine kinase/Hydroxymethylpyrimidine kinase (EC:2.5.1.3)
Phosphomethylpyrimidine kinase n=2 Tax=Bifidobacterium dentium RepID=E0Q5A2_9BIFI
L1_008_000G1_scaffold_144_226
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

246943..247317
DNA (375bp) protein (125aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S731_9BIFI
hypothetical protein
PF01910 family protein {ECO:0000313|EMBL:ETO95854.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_144_227
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

247393..248436
DNA (1044bp) protein (348aa)
Sugar-binding domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5A0_9BIFI
Small molecule-binding regulator domain protein {ECO:0000313|EMBL:ETO95780.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
LacI family transcriptional regulator
L1_008_000G1_scaffold_144_228
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

248717..250042
DNA (1326bp) protein (442aa)
FosB Sucrose permease n=4 Tax=Bifidobacterium dentium RepID=D2Q5I1_BIFDB
fosB; sucrose permease
Oligosaccharide:H+ symporter {ECO:0000313|EMBL:ETO95844.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
L1_008_000G1_scaffold_144_229
unknown

Not on your lists

comp(249991..250140)
DNA (150bp) protein (50aa)

This feature has no annotations

L1_008_000G1_scaffold_144_230
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

250173..251729
DNA (1557bp) protein (519aa)
Glycosyl hydrolase family 32 {ECO:0000313|EMBL:EFM42273.1}; EC=3.2.1.26 {ECO:0000313|EMBL:EFM42273.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
fosC; beta-fructofuranosidase (EC:2.4.1.243)
Glycosyl hydrolase family 32 n=2 Tax=Bifidobacterium dentium RepID=E0Q598_9BIFI
L1_008_000G1_scaffold_144_231
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(251766..253016)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q597_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM42272.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
signal transduction histidine kinase-like protein
L1_008_000G1_scaffold_144_232
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(253016..253729)
DNA (714bp) protein (238aa)
Response regulator receiver domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q596_9BIFI
Response regulator receiver domain protein {ECO:0000313|EMBL:ETO95840.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
two-component response regulator
L1_008_000G1_scaffold_144_233
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

253942..255267
DNA (1326bp) protein (442aa)
Serine proteinase inhibitor n=2 Tax=Bifidobacterium dentium RepID=E0Q595_9BIFI
Serine proteinase inhibitor {ECO:0000313|EMBL:EFM42270.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Neuroserpin precursor
L1_008_000G1_scaffold_144_234
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

255531..256409
DNA (879bp) protein (293aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S724_9BIFI
ABC transporter, permease protein {ECO:0000313|EMBL:EFM42269.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ABC transporter permease
L1_008_000G1_scaffold_144_235
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

256653..257729
DNA (1077bp) protein (359aa)
NMT1/THI5-like protein n=2 Tax=Bifidobacterium dentium RepID=E0Q593_9BIFI
NMT1/THI5-like protein {ECO:0000313|EMBL:EFM42268.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
ABC transporter substrate-binding protein
L1_008_000G1_scaffold_144_236
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

257794..259107
DNA (1314bp) protein (438aa)
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:EFM42267.1}; EC=3.2.2.1 {ECO:0000313|EMBL:EFM42267.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
iunH1; IunH1 inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.3)
Inosine-uridine preferring nucleoside hydrolase n=2 Tax=Bifidobacterium dentium RepID=E0Q592_9BIFI
L1_008_000G1_scaffold_144_237
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(259253..260158)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6R3_9BIFI
PF13338 domain protein {ECO:0000313|EMBL:ETO95749.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
CTP synthase (UTP-ammonia lyase)
L1_008_000G1_scaffold_144_238
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(260465..261316)
DNA (852bp) protein (284aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Bifidobacterium dentium RepID=B1S6R2_9BIFI
L1_008_000G1_scaffold_144_239
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(261262..261990)
DNA (729bp) protein (243aa)
DNA repair protein RecO n=4 Tax=Bifidobacterium dentium RepID=D2Q5J1_BIFDB
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium JCM 1195 = DSM 20436.;"
L1_008_000G1_scaffold_144_240
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(262052..263755)
DNA (1704bp) protein (568aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0Q588_9BIFI
hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EFM42263.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
Displaying items 211-240 of 265 in total

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