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L1_008_000G1_scaffold_160

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_160_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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244..1125
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXN6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12126.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_160_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1070..1396
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12127.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_160_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1586..1723)
DNA (138bp) protein (46aa)
Type IV pilus assembly protein PilZ n=2 Tax=Roseburia RepID=C7GDE5_9FIRM
Type IV pilus assembly protein PilZ {ECO:0000313|EMBL:CDA55601.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
PilZ domain.
L1_008_000G1_scaffold_160_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1829..1927)
DNA (99bp) protein (33aa)
Type IV pilus assembly protein PilZ n=2 Tax=Roseburia RepID=C7GDE5_9FIRM
Type IV pilus assembly protein PilZ {ECO:0000313|EMBL:CDA55601.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2014..3051)
DNA (1038bp) protein (346aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=3 Tax=Roseburia RepID=D4KQT3_9FIRM
L1_008_000G1_scaffold_160_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3136..5553)
DNA (2418bp) protein (806aa)
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQT2_9FIRM
L1_008_000G1_scaffold_160_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5579..6598)
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B3M0_9FIRM
L1_008_000G1_scaffold_160_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6988..7845)
DNA (858bp) protein (286aa)
Predicted membrane protein n=2 Tax=Roseburia RepID=D4KQT0_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL09232.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_160_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7842..10097)
DNA (2256bp) protein (752aa)
Putative SpoIID/LytB domain protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BQT1_9FIRM
Putative SpoIID/LytB domain protein {ECO:0000313|EMBL:CDA55637.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
SpoIID/LytB domain-containing protein
L1_008_000G1_scaffold_160_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10581..11654)
DNA (1074bp) protein (358aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Roseburia RepID=D4KXP2_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA55638.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11907..13511)
DNA (1605bp) protein (535aa)
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Phosphoenolpyruvate carboxykinase [ATP] n=3 Tax=Roseburia intestinalis RepID=D4KQS8_9FIRM
L1_008_000G1_scaffold_160_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13625..14581)
DNA (957bp) protein (319aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQS7_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL09229.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_160_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14596..15648)
DNA (1053bp) protein (351aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9G1_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDA55641.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_160_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15748..16167)
DNA (420bp) protein (140aa)
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase {ECO:0000313|EMBL:CBL12136.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CBL12136.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Cytidine deaminase n=3 Tax=Roseburia RepID=D4KXP6_9FIRM
L1_008_000G1_scaffold_160_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16349..17713
DNA (1365bp) protein (455aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=4 Tax=Roseburia RepID=D4KQS4_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000313|EMBL:CBL12137.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_160_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17739..19307)
DNA (1569bp) protein (523aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDG0_9FIRM
histidine kinase
L1_008_000G1_scaffold_160_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19297..19971)
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXP8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL12138.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_160_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20066..20407)
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GDG2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55646.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20613..20990
DNA (378bp) protein (126aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=4 Tax=Roseburia RepID=D4KQS0_9FIRM
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:CDA55648.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20993..21886
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B3N3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55649.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21973..23463)
DNA (1491bp) protein (497aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=2 Tax=Roseburia RepID=D4KQR8_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDA55651.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23725..24534
DNA (810bp) protein (270aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GDG7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55652.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24629..26098
DNA (1470bp) protein (490aa)
Methyl-accepting chemotaxis protein signaling domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDG8_9FIRM
Methyl-accepting chemotaxis protein signaling domain protein {ECO:0000313|EMBL:EEV00136.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methyl-accepting chemotaxis protein
L1_008_000G1_scaffold_160_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26226..28154)
DNA (1929bp) protein (643aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXQ6_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL12146.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Methyl-accepting chemotaxis protein
L1_008_000G1_scaffold_160_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28335..29126)
DNA (792bp) protein (264aa)
Electron transport complex, RnfABCDGE type, B subunit n=4 Tax=Roseburia RepID=D4KQR4_9FIRM
electron transport complex, RnfABCDGE type, B subunit
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:CBL12147.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_160_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29140..29736)
DNA (597bp) protein (199aa)
Electron transport complex, RnfABCDGE type, A subunit n=4 Tax=Roseburia RepID=D4KQR3_9FIRM
electron transport complex, RnfABCDGE type, A subunit
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_160_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29751..30473)
DNA (723bp) protein (241aa)
Electron transport complex, RnfABCDGE type, E subunit n=4 Tax=Roseburia RepID=D4KQR2_9FIRM
electron transport complex, RnfABCDGE type, E subunit
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30473..31084)
DNA (612bp) protein (204aa)
Electron transport complex, RnfABCDGE type, G subunit n=4 Tax=Roseburia RepID=D4KQR1_9FIRM
electron transport complex, RnfABCDGE type, G subunit
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_160_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31086..32036)
DNA (951bp) protein (317aa)
Na-translocating NADH-quinone reductase Nqr2 subunit n=2 Tax=Roseburia RepID=R6B3P7_9FIRM
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
NADH:ubiquinone oxidoreductase, Na translocating subunit B
L1_008_000G1_scaffold_160_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32087..33412)
DNA (1326bp) protein (442aa)
Electron transport complex, RnfABCDGE type, C subunit n=4 Tax=Roseburia RepID=D4KQR0_9FIRM
electron transport complex, RnfABCDGE type, C subunit
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Displaying items 1-30 of 93 in total

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