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L1_008_000G1_scaffold_251

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_251_1
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

47..748
DNA (702bp) protein (234aa)
Integrase family protein id=2305588 bin=GWB2_Clostridiales_37_7 species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
site-specific recombinase XerD
Tax=GWB2_Clostridiales_37_7_curated
L1_008_000G1_scaffold_251_2
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

732..1709
DNA (978bp) protein (326aa)
Site-specific recombinase XerD n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IV55_9FIRM
Site-specific recombinase XerD {ECO:0000313|EMBL:EQB28407.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
site-specific recombinase XerD
L1_008_000G1_scaffold_251_3
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

1712..2722
DNA (1011bp) protein (337aa)
Phage related integrase id=2305594 bin=GWB2_Clostridiales_37_7 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
phage related integrase
Tax=GWB2_Clostridiales_37_7_curated
L1_008_000G1_scaffold_251_4
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

2820..3635
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RMY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34257.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
Transposase and inactivated derivatives
L1_008_000G1_scaffold_251_5
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3762..4052
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6JZA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB68128.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
L1_008_000G1_scaffold_251_6
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4049..4531
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6L1D8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB68127.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
L1_008_000G1_scaffold_251_7
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4692..5441
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T104_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN95998.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_008_000G1_scaffold_251_8
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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5490..5711
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V656_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93703.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L1_008_000G1_scaffold_251_9
unknown

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5818..6141
DNA (324bp) protein (108aa)

This feature has no annotations

L1_008_000G1_scaffold_251_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6104..6970
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23741.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein (putative transposase or invertase)
L1_008_000G1_scaffold_251_11
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7226..8644
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IS58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS24745.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
site-specific DNA-methyltransferase restriction-modification protein
L1_008_000G1_scaffold_251_12
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8657..11167
DNA (2511bp) protein (837aa)
Histidine kinase n=1 Tax=Clostridium sp. BNL1100 RepID=H2JGF9_9CLOT
Histidine kinase {ECO:0000313|EMBL:AEY65602.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
histidine kinase
L1_008_000G1_scaffold_251_13
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11181..11837
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BNL1100 RepID=H2JGG0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY65603.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L1_008_000G1_scaffold_251_14
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11843..12466
DNA (624bp) protein (208aa)
HNH endonuclease n=1 Tax=Clostridium sp. BNL1100 RepID=H2JGG1_9CLOT
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:AEY65604.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
L1_008_000G1_scaffold_251_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12567..13268
DNA (702bp) protein (234aa)
Chain length determinant protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLA7_9CLOT
Chain length determinant protein {ECO:0000313|EMBL:EEA83174.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
polysaccharide export protein
L1_008_000G1_scaffold_251_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13278..14033
DNA (756bp) protein (252aa)
Sortase, SrtB family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLA8_9CLOT
Sortase, SrtB family {ECO:0000313|EMBL:EEA83175.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sortase, SrtB family
L1_008_000G1_scaffold_251_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14026..14991
DNA (966bp) protein (322aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLA9_9CLOT
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EEA83176.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cell envelope-related transcriptional attenuator
L1_008_000G1_scaffold_251_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15050..15646
DNA (597bp) protein (199aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLB0_9CLOT
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEA83177.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L1_008_000G1_scaffold_251_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15749..16471
DNA (723bp) protein (241aa)
PHP domain protein {ECO:0000313|EMBL:EEA83178.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEA83178.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
PHP domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLB1_9CLOT
L1_008_000G1_scaffold_251_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16487..17167
DNA (681bp) protein (227aa)
Capsular exopolysaccharide family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLB2_9CLOT
Capsular exopolysaccharide family {ECO:0000313|EMBL:EEA83179.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
capsular exopolysaccharide family
L1_008_000G1_scaffold_251_21
unknown

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17127..17243
DNA (117bp) protein (39aa)

This feature has no annotations

L1_008_000G1_scaffold_251_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17333..21181
DNA (3849bp) protein (1283aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridium RepID=B6FLB3_9CLOT
L1_008_000G1_scaffold_251_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21196..24891
DNA (3696bp) protein (1232aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium RepID=B6FLB4_9CLOT
L1_008_000G1_scaffold_251_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24960..26603
DNA (1644bp) protein (548aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PPV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22839.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_251_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26655..27731
DNA (1077bp) protein (359aa)
pepQ; Xaa-Pro dipeptidase (EC:3.4.13.9)
Creatinase n=2 Tax=Clostridium RepID=B6FLB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22838.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L1_008_000G1_scaffold_251_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27741..29171
DNA (1431bp) protein (477aa)
Xaa-His dipeptidase n=2 Tax=Clostridium RepID=B6FLB9_9CLOT
Xaa-His dipeptidase {ECO:0000313|EMBL:EEA83162.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
aminoacyl-histidine dipeptidase
L1_008_000G1_scaffold_251_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29241..29741)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PWI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22836.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L1_008_000G1_scaffold_251_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29944..30513
DNA (570bp) protein (190aa)
HDIG domain protein n=2 Tax=Clostridium RepID=B6FLC1_9CLOT
HDIG domain protein {ECO:0000313|EMBL:EEA83164.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
HD domain-containing protein
L1_008_000G1_scaffold_251_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30517..31428
DNA (912bp) protein (304aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC2_9CLOT
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEA83165.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative permease
L1_008_000G1_scaffold_251_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31455..33296
DNA (1842bp) protein (614aa)
HAMP domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC3_9CLOT
HAMP domain protein {ECO:0000313|EMBL:EEA83166.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
signal transduction histidine kinase, LytS
Displaying items 1-30 of 78 in total

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