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L1_008_000G1_scaffold_256

Search features with annotation key words

Displaying items 31-60 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_256_31
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28394..28744)
DNA (351bp) protein (117aa)
Nucleoid-associated protein ROI_41000 n=4 Tax=Roseburia RepID=D4KKD4_9FIRM
conserved hypothetical protein TIGR00103
Nucleoid-associated protein BN484_00730 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_32
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28755..30359)
DNA (1605bp) protein (535aa)
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EEU99493.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEU99493.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunit gamma and tau n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFD5_9FIRM
L1_008_000G1_scaffold_256_33
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30337..31410)
DNA (1074bp) protein (358aa)
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase {ECO:0000313|EMBL:CBL10949.1}; EC=2.7.1.11 {ECO:0000313|EMBL:CBL10949.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
6-phosphofructokinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUA9_9FIRM
L1_008_000G1_scaffold_256_34
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31942..33384
DNA (1443bp) protein (481aa)
Citrate transporter n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFE2_9FIRM
Citrate transporter {ECO:0000313|EMBL:EEU99500.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transporter, UIT6 family (TC 9.B.53)
L1_008_000G1_scaffold_256_35
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33400..34398
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKC9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10809.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_36
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34679..36064)
DNA (1386bp) protein (462aa)
MATE efflux family protein n=2 Tax=Roseburia intestinalis RepID=C7GFE5_9FIRM
putative efflux protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:EEU99503.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_256_37
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36279..37262)
DNA (984bp) protein (328aa)
phosphotransacetylase (EC:2.3.1.8)
Phosphotransacetylase {ECO:0000313|EMBL:CBL10807.1}; EC=2.3.1.8 {ECO:0000313|EMBL:CBL10807.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phosphotransacetylase n=2 Tax=Roseburia intestinalis RepID=D4KKC7_9FIRM
L1_008_000G1_scaffold_256_38
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37554..38012)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BDT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57256.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_256_39
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38373..38837)
DNA (465bp) protein (155aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cytosine/adenosine deaminases n=3 Tax=Roseburia RepID=D4KU99_9FIRM
Cytosine/adenosine deaminases
L1_008_000G1_scaffold_256_40
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38926..39504
DNA (579bp) protein (193aa)
Acetyltransferases, including N-acetylases of ribosomal proteins (EC:2.3.1.128)
Acetyltransferases, including N-acetylases of ribosomal proteins {ECO:0000313|EMBL:CBL10804.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CBL10804.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Acetyltransferases, including N-acetylases of ribosomal proteins n=3 Tax=Roseburia intestinalis RepID=D4KU98_9FIRM
L1_008_000G1_scaffold_256_41
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39561..40598)
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU97_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10937.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_42
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40707..42323)
DNA (1617bp) protein (539aa)
Sensory box/GGDEF family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B286_9FIRM
Sensory box/GGDEF family protein {ECO:0000313|EMBL:CDA57260.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
two-component system PleD-like family response regulator
L1_008_000G1_scaffold_256_43
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42499..42891
DNA (393bp) protein (131aa)
Fe2+/Zn2+ uptake regulation proteins n=4 Tax=Roseburia RepID=D4KKC2_9FIRM
Fe2+/Zn2+ uptake regulation proteins
Fe2+/Zn2+ uptake regulation proteins {ECO:0000313|EMBL:CDA57261.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_44
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43075..43617
DNA (543bp) protein (181aa)
Rubrerythrin n=4 Tax=Roseburia RepID=D4KKC1_9FIRM
Rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:CDA57262.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_45
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43706..44128)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU94_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10934.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_46
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44501..47035)
DNA (2535bp) protein (845aa)
Sensor histidine kinase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B8J3_9FIRM
Sensor histidine kinase {ECO:0000313|EMBL:CDA57264.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_256_47
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47032..47724)
DNA (693bp) protein (231aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=D4KU93_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulator receiver domain protein {ECO:0000313|EMBL:EEV01042.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_256_48
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47961..49310
DNA (1350bp) protein (450aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU92_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL10932.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_49
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49380..50972)
DNA (1593bp) protein (531aa)
Superfamily II DNA and RNA helicases n=2 Tax=Roseburia intestinalis RepID=D4KKB8_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEV01044.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Superfamily II DNA and RNA helicases
L1_008_000G1_scaffold_256_50
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51345..52958)
DNA (1614bp) protein (538aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAM8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEV01046.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
diguanylate cyclase (GGDEF) domain
L1_008_000G1_scaffold_256_51
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53080..53853)
DNA (774bp) protein (258aa)
Membrane proteins related to metalloendopeptidases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB6_9FIRM
Membrane proteins related to metalloendopeptidases
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CBL10796.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_52
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53937..54959)
DNA (1023bp) protein (341aa)
SpoIID/LytB domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKB5_9FIRM
SpoIID/LytB domain
SpoIID/LytB domain {ECO:0000313|EMBL:CBL10795.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_53
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55018..55644)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01049.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_256_54
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(55666..56538)
DNA (873bp) protein (291aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Roseburia intestinalis RepID=D4KKB4_9FIRM
L1_008_000G1_scaffold_256_55
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56549..56968)
DNA (420bp) protein (140aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GAN3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10793.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_56
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57175..59268)
DNA (2094bp) protein (698aa)
Methyl-accepting chemotaxis protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU84_9FIRM
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL10924.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Methyl-accepting chemotaxis protein
L1_008_000G1_scaffold_256_57
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59568..60848
DNA (1281bp) protein (427aa)
Predicted DNA-binding protein with the Helix-hairpin-helix motif n=2 Tax=Roseburia intestinalis RepID=D4KU83_9FIRM
Predicted DNA-binding protein with the Helix-hairpin-helix motif
Predicted DNA-binding protein with the Helix-hairpin-helix motif {ECO:0000313|EMBL:CBL10791.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_58
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60977..61834
DNA (858bp) protein (286aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B2A7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57280.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_59
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61893..62687)
DNA (795bp) protein (265aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family {ECO:0000313|EMBL:CBL10921.1}; EC=3.1.21.- {ECO:0000313|EMBL:CBL10921.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Hydrolase TatD family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVM1_9FIRM
L1_008_000G1_scaffold_256_60
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62879..63214)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KU80_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57283.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 31-60 of 76 in total

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