ggKbase home page

L1_008_000G1_scaffold_256

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_256_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(326..1033)
DNA (708bp) protein (236aa)
Colicin V production protein n=2 Tax=Roseburia RepID=D4KKH2_9FIRM
Colicin V production protein.
Colicin V production protein {ECO:0000313|EMBL:CDA57199.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1045..2241)
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUE5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10985.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2410..3918)
DNA (1509bp) protein (503aa)
LysM domain n=2 Tax=Roseburia RepID=D4KUE4_9FIRM
LysM domain.
LysM domain {ECO:0000313|EMBL:CDA57201.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4089..5030)
DNA (942bp) protein (314aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase C-terminal subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVE0_9FIRM
Transketolase C-terminal subunit {ECO:0000313|EMBL:CDA57202.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5018..5854)
DNA (837bp) protein (279aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase, N-terminal subunit {ECO:0000313|EMBL:CBL10981.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CBL10981.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Transketolase, N-terminal subunit n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUE1_9FIRM
L1_008_000G1_scaffold_256_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5886..6482)
DNA (597bp) protein (199aa)
Recombination protein RecR n=4 Tax=Roseburia RepID=D4KKG7_9FIRM
Recombinational DNA repair protein (RecF pathway)
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6687..6842
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZ96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57208.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_256_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6918..9554)
DNA (2637bp) protein (879aa)
copper-(or silver)-translocating P-type ATPase (EC:3.6.3.4)
Copper-(Or silver)-translocating P-type ATPase {ECO:0000313|EMBL:CBL10845.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CBL10845.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Copper-(Or silver)-translocating P-type ATPase n=2 Tax=Roseburia intestinalis RepID=D4KKG5_9FIRM
L1_008_000G1_scaffold_256_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9583..9897)
DNA (315bp) protein (105aa)
Uncharacterized protein conserved in bacteria n=4 Tax=Roseburia RepID=D4KKG4_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA57210.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10038..11369)
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFA9_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEU99467.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Na+-driven multidrug efflux pump
L1_008_000G1_scaffold_256_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11468..11845)
DNA (378bp) protein (126aa)
Death-on-curing family protein n=4 Tax=Roseburia RepID=D4KKG2_9FIRM
death-on-curing family protein
Death-on-curing family protein {ECO:0000313|EMBL:EEU99468.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_256_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11842..12084)
DNA (243bp) protein (81aa)
Phd_YefM n=4 Tax=Roseburia RepID=D4KKG1_9FIRM
Phd_YefM.
Phd_YefM {ECO:0000313|EMBL:CDA57215.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12222..12647)
DNA (426bp) protein (142aa)
Flavodoxin, short chain n=4 Tax=Roseburia RepID=D4KUD2_9FIRM
flavodoxin, short chain
Flavodoxin short chain {ECO:0000313|EMBL:CDA57216.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12838..13491)
DNA (654bp) protein (218aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GFB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99471.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_256_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13660..14433)
DNA (774bp) protein (258aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUC7_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL10967.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14611..15819)
DNA (1209bp) protein (403aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.23)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFB8_9FIRM
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:EEU99476.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_256_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15959..16825)
DNA (867bp) protein (289aa)
Uncharacterized conserved protein n=4 Tax=Roseburia RepID=D4KKF4_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL10965.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_256_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16938..19499)
DNA (2562bp) protein (854aa)
Signal transduction histidine kinase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BDP6_9FIRM
Signal transduction histidine kinase {ECO:0000313|EMBL:CDA57221.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Signal transduction histidine kinase
L1_008_000G1_scaffold_256_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19489..20379)
DNA (891bp) protein (297aa)
Bacterial extracellular solute-binding protein n=2 Tax=Roseburia RepID=R6BVG0_9FIRM
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CDA57222.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_008_000G1_scaffold_256_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20676..20960)
DNA (285bp) protein (95aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Acylphosphatases (EC:3.6.1.7)
Acylphosphatase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC3_9FIRM
L1_008_000G1_scaffold_256_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20974..21147)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BVH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA57237.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_256_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21147..21455)
DNA (309bp) protein (103aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GFC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99483.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_256_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21413..22093)
DNA (681bp) protein (227aa)
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKE3_9FIRM
exonuclease, DNA polymerase III, epsilon subunit family
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:CBL10823.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22139..22672)
DNA (534bp) protein (178aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Fructose-2,6-bisphosphatase n=4 Tax=Roseburia RepID=D4KUB9_9FIRM
Fructose-2 6-bisphosphatase {ECO:0000313|EMBL:CDA57241.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22729..22998)
DNA (270bp) protein (90aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GFC8_9FIRM
Protein of unknown function (FYDLN_acid).
Uncharacterized protein {ECO:0000313|EMBL:CBL10821.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23296..24471)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99487.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_256_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24560..26185)
DNA (1626bp) protein (542aa)
Bacterial flagellin domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFD0_9FIRM
Bacterial flagellin domain protein {ECO:0000313|EMBL:EEU99488.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Flagellin and related hook-associated proteins
L1_008_000G1_scaffold_256_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26348..26608)
DNA (261bp) protein (87aa)
Global regulator protein family n=3 Tax=Roseburia RepID=D4KKD7_9FIRM
Global regulator protein family.
Global regulator protein family {ECO:0000313|EMBL:CDA57246.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_256_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26714..27292
DNA (579bp) protein (193aa)
Site-specific recombinase XerD n=2 Tax=Roseburia intestinalis RepID=D4KKD6_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBL10816.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_256_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27514..28284
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUB2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10952.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 76 in total

View Taxonomy