ggKbase home page

L1_008_000G1_scaffold_304

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_304_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(935..2131)
DNA (1197bp) protein (399aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=4 Tax=Roseburia RepID=D4KSR5_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CBL12219.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_304_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2464..2676
DNA (213bp) protein (71aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G5B2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55750.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2821..3195)
DNA (375bp) protein (125aa)
Endoribonuclease L-PSP n=4 Tax=Roseburia RepID=D4KSR2_9FIRM
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:CDA55751.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3249..4085)
DNA (837bp) protein (279aa)
Uncharacterized protein conserved in bacteria n=3 Tax=Roseburia RepID=D4KSR1_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDA55752.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4088..4831)
DNA (744bp) protein (248aa)
Acyl-ACP thioesterase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5B5_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:EEV02992.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Acyl-ACP thioesterase
L1_008_000G1_scaffold_304_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5184..5822)
DNA (639bp) protein (213aa)
YigZ family protein n=4 Tax=Roseburia RepID=C7G5B6_9FIRM
conserved hypothetical protein TIGR00257
Uncharacterized protein {ECO:0000313|EMBL:CBL12213.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_304_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6099..8888
DNA (2790bp) protein (930aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:CBL12211.1}; EC=2.4.1.- {ECO:0000313|EMBL:CBL12211.1};; EC=3.4.-.- {ECO:0000313|EMBL:CBL12211.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
penicillin-binding protein, 1A family (EC:2.4.1.- 3.4.-.-)
Penicillin-binding protein, 1A family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KXX1_9FIRM
L1_008_000G1_scaffold_304_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9130..9510)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSQ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09909.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_304_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9548..9718)
DNA (171bp) protein (57aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B9P9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55766.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9738..10199)
DNA (462bp) protein (154aa)
Uncharacterized protein/domain associated with GTPases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSQ5_9FIRM
Uncharacterized protein/domain associated with GTPases
Uncharacterized protein/domain associated with GTPases {ECO:0000313|EMBL:CBL09907.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_304_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10242..10517)
DNA (276bp) protein (92aa)
Mor transcription activator family n=2 Tax=Roseburia RepID=D4KXW7_9FIRM
Mor transcription activator family {ECO:0000313|EMBL:CDA55768.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Mor transcription activator family.
L1_008_000G1_scaffold_304_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10691..11062)
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7G5C4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12206.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_304_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11122..11310)
DNA (189bp) protein (63aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G5C5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55780.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11436..15659)
DNA (4224bp) protein (1408aa)
Putative serine/threonine protein kinase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9R2_9FIRM
Putative serine/threonine protein kinase {ECO:0000313|EMBL:CDA55781.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
NB-ARC domain.
L1_008_000G1_scaffold_304_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15859..17181
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5C9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV03006.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_304_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17376..17753)
DNA (378bp) protein (126aa)
HEPN domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5D0_9FIRM
HEPN domain protein {ECO:0000313|EMBL:EEV03007.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_304_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17746..18084)
DNA (339bp) protein (113aa)
Predicted nucleotidyltransferases n=2 Tax=Roseburia intestinalis RepID=D4KSP9_9FIRM
Predicted nucleotidyltransferases
Predicted nucleotidyltransferases {ECO:0000313|EMBL:CBL09901.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_304_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18360..19145)
DNA (786bp) protein (262aa)
Site-specific recombinase, phage integrase family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5D2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEV03009.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Site-specific recombinase XerD
L1_008_000G1_scaffold_304_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19372..19557
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7G5D3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12951.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_304_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19780..21186)
DNA (1407bp) protein (469aa)
Ammonium transporter n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L012_9FIRM
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002, ECO:0000313|EMBL:CBL12952.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_304_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21258..21596)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=3 Tax=Roseburia intestinalis RepID=D4KSP5_9FIRM
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEV03012.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_304_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21817..23937)
DNA (2121bp) protein (707aa)
Uncharacterized protein related to glutamine synthetase {ECO:0000313|EMBL:CBL12955.1}; EC=6.3.1.2 {ECO:0000313|EMBL:CBL12955.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Uncharacterized protein related to glutamine synthetase n=3 Tax=Roseburia RepID=D4KSP3_9FIRM
L1_008_000G1_scaffold_304_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24325..25191)
DNA (867bp) protein (289aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist {ECO:0000313|EMBL:CBL09894.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CBL09894.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist n=4 Tax=Roseburia RepID=D4KSP2_9FIRM
L1_008_000G1_scaffold_304_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25284..26186)
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KSP1_9FIRM
conserved protein of unknown function cotranscribed with Bmr (bmrU)
Putative phage tail component domain protein {ECO:0000313|EMBL:EEV03016.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_304_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26208..26459)
DNA (252bp) protein (84aa)
Phosphotransferase System HPr (HPr) Family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B420_9FIRM
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CDA55804.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Phosphotransferase System HPr (HPr) Family
L1_008_000G1_scaffold_304_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26633..27526)
DNA (894bp) protein (298aa)
Putative sporulation transcription regulator WhiA n=4 Tax=Roseburia RepID=D4KSN9_9FIRM
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_304_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27530..28405)
DNA (876bp) protein (292aa)
UPF0042 nucleotide-binding protein ROI_30040 n=4 Tax=Roseburia RepID=D4KSN8_9FIRM
Predicted P-loop-containing kinase
Nucleotide-binding protein ROSINTL182_05100 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_304_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28451..29359)
DNA (909bp) protein (303aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=2 Tax=Roseburia intestinalis RepID=D4L021_9FIRM
L1_008_000G1_scaffold_304_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29381..30781)
DNA (1401bp) protein (467aa)
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387, ECO:0000313|EMBL:CBL12962.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
M18 family aminopeptidase n=2 Tax=Roseburia intestinalis RepID=D4L022_9FIRM
L1_008_000G1_scaffold_304_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30827..31768)
DNA (942bp) protein (314aa)
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.4.- 2.7.11.-)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
HPr kinase/phosphorylase n=4 Tax=Roseburia RepID=D4KSN5_9FIRM
Displaying items 1-30 of 64 in total

View Taxonomy