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L1_008_000G1_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000G1_scaffold_310_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(193..1296)
DNA (1104bp) protein (368aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV76_9FIRM
L1_008_000G1_scaffold_310_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1439..2767
DNA (1329bp) protein (443aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNK6_9FIRM
L1_008_000G1_scaffold_310_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2897..4051
DNA (1155bp) protein (385aa)
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Queuine tRNA-ribosyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KNK7_9FIRM
L1_008_000G1_scaffold_310_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4152..4475
DNA (324bp) protein (108aa)
Protein translocase subunit yajC n=4 Tax=Roseburia RepID=D4KNK8_9FIRM
protein translocase subunit yajC
Protein translocase subunit yajC {ECO:0000313|EMBL:CBL11270.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_008_000G1_scaffold_310_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4600..5088
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BUE6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56872.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_310_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5097..5507
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01207.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_310_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5521..6468
DNA (948bp) protein (316aa)
Helix-turn-helix n=2 Tax=Roseburia intestinalis RepID=D4KNL0_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL08462.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_8
unknown

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comp(6423..6596)
DNA (174bp) protein (58aa)

This feature has no annotations

L1_008_000G1_scaffold_310_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6732..8042
DNA (1311bp) protein (437aa)
Arylsulfatase regulator (Fe-S oxidoreductase) n=2 Tax=Roseburia intestinalis RepID=D4KNL1_9FIRM
Arylsulfatase regulator (Fe-S oxidoreductase)
Arylsulfatase regulator (Fe-S oxidoreductase) {ECO:0000313|EMBL:CBL08463.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8068..8214
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GAF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01210.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_310_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8321..8794
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GAF4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08465.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8791..10476
DNA (1686bp) protein (562aa)
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain n=2 Tax=Roseburia intestinalis RepID=D4KNL4_9FIRM
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain {ECO:0000313|EMBL:CBL08466.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
L1_008_000G1_scaffold_310_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10907..12007
DNA (1101bp) protein (367aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
3-isopropylmalate dehydrogenase n=5 Tax=Roseburia RepID=D4KNL5_9FIRM
L1_008_000G1_scaffold_310_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12141..13817
DNA (1677bp) protein (559aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Dihydroxy-acid dehydratase n=4 Tax=Roseburia RepID=D4KV88_9FIRM
L1_008_000G1_scaffold_310_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13926..15614
DNA (1689bp) protein (563aa)
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Acetolactate synthase n=3 Tax=Roseburia RepID=D4KNL7_9FIRM
L1_008_000G1_scaffold_310_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15635..16717
DNA (1083bp) protein (361aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL11280.1}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL11280.1};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphoserine aminotransferase n=2 Tax=Roseburia RepID=D4KV90_9FIRM
L1_008_000G1_scaffold_310_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16717..17880
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Phosphoglycerate dehydrogenase and related dehydrogenases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUV1_9FIRM
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CDA54810.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_310_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18013..19263
DNA (1251bp) protein (417aa)
Uncharacterized conserved protein n=3 Tax=Roseburia intestinalis RepID=D4KNM0_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL08472.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19420..20334
DNA (915bp) protein (305aa)
Small-conductance mechanosensitive channel n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BNA1_9FIRM
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CDA54812.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Small-conductance mechanosensitive channel
L1_008_000G1_scaffold_310_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21013..21216
DNA (204bp) protein (68aa)
Cold-shock DNA-binding protein family n=3 Tax=Roseburia intestinalis RepID=D4KNM2_9FIRM
cold-shock DNA-binding protein family
Cold shock protein CspA {ECO:0000313|EMBL:EEV01146.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_008_000G1_scaffold_310_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21469..24399
DNA (2931bp) protein (977aa)
Predicted Zn-dependent peptidases, insulinase-like n=2 Tax=Roseburia intestinalis RepID=D4KNM3_9FIRM
Predicted Zn-dependent peptidases, insulinase-like {ECO:0000313|EMBL:CBL08475.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Predicted Zn-dependent peptidases, insulinase-like
L1_008_000G1_scaffold_310_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24418..25326
DNA (909bp) protein (303aa)
GTPase Era n=4 Tax=Roseburia RepID=D4KNM4_9FIRM
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_008_000G1_scaffold_310_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25412..25591
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AS33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54818.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_310_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25530..26294
DNA (765bp) protein (255aa)
DNA repair protein RecO n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNM5_9FIRM
DNA replication and repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26361..27113
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GAH4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08478.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L1_008_000G1_scaffold_310_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27167..28564
DNA (1398bp) protein (466aa)
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycine--tRNA ligase n=4 Tax=Roseburia RepID=D4KNM7_9FIRM
L1_008_000G1_scaffold_310_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28571..30097
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01153.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L1_008_000G1_scaffold_310_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30107..31366
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54829.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L1_008_000G1_scaffold_310_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31425..34229
DNA (2805bp) protein (935aa)
Predicted membrane protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUX1_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDA54830.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted membrane protein
L1_008_000G1_scaffold_310_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34183..35256
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BNC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54832.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Acyltransferase family.
Displaying items 1-30 of 57 in total

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